Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Clacu07g0338 | ATGGCGAATCGATGGTGGGCTGAAAATATACCCACCACCACGGACAGCAGTACCAGCAACCCTTATTCGACTCCATTAAAGCAAAGCTTAGAAGCTGCTGATGAAGAGAACAACTCGGGAAGCCATGAGAGAGCTGAACCAGGCACCAGTTCAAGCACGCGCCGCCCTCGTGGCCGGCCGCCGGGATCTAAGAACAAGCCGAAGCCACCGGTGGTTGTAACGAAGGAGAGCCCCGATGCCCTCCGGAGCCACGTTTTGGAAATAGGCAGCGGCAGTGACATCGTTGAAAGCATCTCGAACTTCGCCCAGCGCCGGCAGCGAGGAGTTTCAGTTCTTAGCGGAAATGGGGTTGTCGCCAATGTAACTCTCCGGCATCCGGCGGCCCCAGGCGGCGTTATTACACTACAAGGTCGATTTGATATACTGTCGCTCTCTGGTGCTTTTTTGCCTGCCCCAGCTCCGCCGGGTGCAACTGGGTTAACTGTCTACTTGGCTGGCGGACAGGGGCAGGTCGTTGGTGGCATTGTTGTCGGTGCACTTGTTGCAACCGGTCCAGTCATCGTCATCGCTGCCACTTTCACCAATGCAACATTCGAGCGGCTGCCGCTTGAGGACGAGGAGGTGGCTGCGGGAGACAAGTCTGGGACTAGTCAGAACAATTCAACTTCTCAGAGCATGGGGGAGCAACAGCAACAGCAGCAACAACAGCAACAGCAGCCTTCAATGGGAGTTTACAATATGGGTCCAAACTTGGTGCCAAATGGTCAGGTTTCTTCACATGATGTGTTTTGGAGTCCTCCTAGAGCCCCACCTCCATTTTAA | 822 | 54.87 | MANRWWAENIPTTTDSSTSNPYSTPLKQSLEAADEENNSGSHERAEPGTSSSTRRPRGRPPGSKNKPKPPVVVTKESPDALRSHVLEIGSGSDIVESISNFAQRRQRGVSVLSGNGVVANVTLRHPAAPGGVITLQGRFDILSLSGAFLPAPAPPGATGLTVYLAGGQGQVVGGIVVGALVATGPVIVIAATFTNATFERLPLEDEEVAAGDKSGTSQNNSTSQSMGEQQQQQQQQQQQPSMGVYNMGPNLVPNGQVSSHDVFWSPPRAPPPF | 273 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 7 | 3843198 | 3844019 | - | ClG42_07g0033800.10 | Clacu07g0338 | 252936 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Clacu07g0338 | 273 | CDD | DUF296 | 82 | 165 | IPR005175 | - | |
| Clacu07g0338 | 273 | FunFam | AT-hook motif nuclear-localized protein | 81 | 208 | - | - | |
| Clacu07g0338 | 273 | SUPERFAMILY | AF0104/ALDC/Ptd012-like | 79 | 208 | - | - | |
| Clacu07g0338 | 273 | Pfam | Plants and Prokaryotes Conserved (PCC) domain | 82 | 194 | IPR005175 | - | |
| Clacu07g0338 | 273 | ProSiteProfiles | PPC domain profile profile. | 78 | 216 | IPR005175 | - | |
| Clacu07g0338 | 273 | MobiDBLite | consensus disorder prediction | 1 | 78 | - | - | |
| Clacu07g0338 | 273 | MobiDBLite | consensus disorder prediction | 43 | 58 | - | - | |
| Clacu07g0338 | 273 | MobiDBLite | consensus disorder prediction | 207 | 273 | - | - | |
| Clacu07g0338 | 273 | PANTHER | AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 | 24 | 270 | IPR014476 | GO:0003680(PANTHER)|GO:0003680(InterPro)|GO:0003700(PANTHER)|GO:0005634(PANTHER) | |
| Clacu07g0338 | 273 | PIRSF | ESCAROLA | 7 | 271 | IPR014476 | GO:0003680(InterPro) | |
| Clacu07g0338 | 273 | Gene3D | - | 81 | 210 | - | - | |
| Clacu07g0338 | 273 | MobiDBLite | consensus disorder prediction | 1 | 35 | - | - | |
| Clacu07g0338 | 273 | MobiDBLite | consensus disorder prediction | 212 | 261 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Clacu02g1735 | Clacu-Chr2:30844980 | Clacu07g0338 | Clacu-Chr7:3843198 | 8.00E-71 | dispersed | |
| Clacu05g0508 | Clacu-Chr5:4214245 | Clacu07g0338 | Clacu-Chr7:3843198 | 3.30E-66 | dispersed | |
| Clacu06g0677 | Clacu-Chr6:7814494 | Clacu07g0338 | Clacu-Chr7:3843198 | 2.20E-54 | dispersed | |
| Clacu06g1544 | Clacu-Chr6:26368922 | Clacu07g0338 | Clacu-Chr7:3843198 | 3.90E-59 | dispersed | |
| Clacu07g0338 | Clacu-Chr7:3843198 | Clacu09g1220 | Clacu-Chr9:12287147 | 7.20E-58 | dispersed | |
| Clacu03g1296 | Clacu-Chr3:24942690 | Clacu07g0338 | Clacu-Chr7:3843198 | 9.10E-37 | transposed | |
| Clacu11g0821 | Clacu-Chr11:8110685 | Clacu07g0338 | Clacu-Chr7:3843198 | 1.40E-55 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Clacu07g0338 | - | - | - | 0.0 |