Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu07g0403 ATGGAAGGGAAGGAAGAAGATGTAAGACTTGGAGCTAACAAGTTCACCGAGAGACAGCCAATTGGAACGGCGGCGCAGAGTCAAGATGACGGCAAGGACTACAAGGAGCCACCGCCGGCGCCGTTGTTCGAGCCGGAGGAGCTCACTTCATGGTCCTTTTACAGAGCTGGAATTGCAGAGTTTTTCGCCACTTTCCTCTTCCTTTACATCACCGTTTTGACCGTCATGGGTGTCGTCCGGTCCAACGAAGCCAACGGCAACACCTGTAAGACCGTCGGGATTCAGGGGATTGCTTGGGCTTTCGGCGGTATGATTTTCGCTCTGGTTTACTGTACTGCTGGAATTTCCGGTGGACACATTAACCCGGCGGTGACTTTCGGGCTGTTTTTGGCGAGAAAGTTGTCGTTGACCAGGGCGATTTTCTACATAGTGATGCAGTGCCTTGGTGCCATCTGCGGCGCCGGCGTGGTGAAGGGGTTCCAACCCAAGCCCTACGACAGGCTCGGTGGTGGAGCTAACGTTGTGAACAGTGGATACACCAAAGGAGATGGGCTCGGCGCTGAGATCGTCGGCACATTCATCCTTGTTTACACCGTCTTCTCCGCCACTGACGCCAAACGTAGTGCCAGAGACTCACATGTTCCGATTTTGGCACCGTTGCCAATTGGGTTTGCAGTGTTCTTAGTTCACTTGGCCACCATTCCGATCACCGGCACCGGCATCAACCCAGCCCGGAGCTTGGGAGCTGCCATTATTTTCAACCACGACAAAGCCTGGGATCATCACTGGATTTTCTGGGTGGGACCATTCATCGGCGCTGCTCTTGCAGCTCTTTACCACCAAGTTGTGATCAGAGCCATCCCTTTCAAGTCCAAGTGA 879 53.81 MEGKEEDVRLGANKFTERQPIGTAAQSQDDGKDYKEPPPAPLFEPEELTSWSFYRAGIAEFFATFLFLYITVLTVMGVVRSNEANGNTCKTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRAIFYIVMQCLGAICGAGVVKGFQPKPYDRLGGGANVVNSGYTKGDGLGAEIVGTFILVYTVFSATDAKRSARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIFNHDKAWDHHWIFWVGPFIGAALAALYHQVVIRAIPFKSK 292
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 4619390 4620988 - ClG42_07g0040300.10 Clacu07g0403 253001
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu07g0403 292 Gene3D Glycerol uptake facilitator protein. 40 291 IPR023271 -
Clacu07g0403 292 PRINTS Major intrinsic protein family signature 55 74 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Clacu07g0403 292 PRINTS Major intrinsic protein family signature 223 245 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Clacu07g0403 292 PRINTS Major intrinsic protein family signature 263 283 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Clacu07g0403 292 PRINTS Major intrinsic protein family signature 101 125 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Clacu07g0403 292 PRINTS Major intrinsic protein family signature 138 157 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Clacu07g0403 292 PRINTS Major intrinsic protein family signature 187 205 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Clacu07g0403 292 SUPERFAMILY Aquaporin-like 46 285 IPR023271 -
Clacu07g0403 292 CDD MIP 55 283 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Clacu07g0403 292 FunFam Probable aquaporin PIP1-2 40 292 - -
Clacu07g0403 292 ProSitePatterns MIP family signature. 119 127 IPR022357 -
Clacu07g0403 292 PANTHER AQUAPORIN OR AQUAGLYCEROPORIN RELATED 5 291 IPR034294 GO:0005773(PANTHER)|GO:0005886(PANTHER)|GO:0009414(PANTHER)|GO:0009506(PANTHER)|GO:0015250(PANTHER)
Clacu07g0403 292 Pfam Major intrinsic protein 47 280 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Clacu07g0403 292 NCBIfam MIP family channel protein 59 280 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Clacu07g0403 292 MobiDBLite consensus disorder prediction 1 39 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu05g2291 Clacu-Chr5:31293989 Clacu07g0403 Clacu-Chr7:4619390 2.40E-108 dispersed
Clacu07g0403 Clacu-Chr7:4619390 Clacu07g0406 Clacu-Chr7:4632940 1.90E-165 dispersed
Clacu07g0403 Clacu-Chr7:4619390 Clacu07g0405 Clacu-Chr7:4625997 1.90E-165 proximal
Clacu01g0259 Clacu-Chr1:2530915 Clacu07g0403 Clacu-Chr7:4619390 1.80E-139 transposed
Clacu02g1182 Clacu-Chr2:23728701 Clacu07g0403 Clacu-Chr7:4619390 7.30E-17 transposed
Clacu10g2158 Clacu-Chr10:34732346 Clacu07g0403 Clacu-Chr7:4619390 3.80E-126 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu07g0403 K09872 - csv:101215145 565.459