Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu07g0410 ATGGCTTCCGTATATCGTGATCGGACGTCGGAATTTCGGTCACTGTCGGAGACGCTGAAGAAGATCGGTGGAGCCACAGCTGCCGTCAATCCAGCTCAAAATGAACCATCGGCGTCCACGCCCTCCGGATCACCGGCCTTTGCACGATCAGAATTCAGCAAAAAGGCCTCGCGCATCGGATTGGGTATCCAAGAAACCTCTCAGAAGATCGTGAGGCTCGCTCAGTTGGCGAAAAGATCATCAATGTTTGATGACCCAATAAGGGAAATACAGGAAATGACTGCTTTGATTAAAAATGATATTACATCCTTGAATGTAGCGATCACAGACTTGCAAACCATCCATAACATGGAGACAACAGAGAGGAATTATTCAGAGGATAGAGTGGTTCATTCAACAGCTGTCTGTGATGACTTGAAGAGCAGACTTATGGGAGCTACAAAACAGCTTCAAGATGTGCTAACTACAAGAACAGAGAATATCAAGGCCAATGAGAGCCGGAGGCAAATATTTTCTGCAAATGCATCCAGAGAAAGTCCTTTCCAGAATCAACCCAAAACTGTAACACAACCTCCACCTTGGTCAAGTAATACATCTGGAAGTGCCCAATCACCCTTGTTGTCATCAAATGGAGCTCAAGTTGGGGGTCAATTGAGACGAAGGTTAGCTGTGGAGAACATGAACACCCCATCACAGCAAATGGAGATGTCAATGTTACAGCAGGTGGTTCCTAGGCAGGAAAATTATTCACAAAGTCGTGCAGTTGCACTCCATAATGTGGAATCCACCATATCAGAACTCAGTGGAATTTTTACACATCTTGCCACTATGGTAGCACATCAAGGAGAACTTGCTATCAGGATTGATGACAATATGGATGAATCGTTGGCAAACGTAGATGGTGCTCGGAGTGCTCTTTTAAGGCATCTTAACCAGATATCATCAAACAGATGGCTTCTTATAAAAATATTTGCCATTTTAATAATTTTCTTGATGGTCTTTATATTCTTGGCGTGA 1017 43.76 MASVYRDRTSEFRSLSETLKKIGGATAAVNPAQNEPSASTPSGSPAFARSEFSKKASRIGLGIQETSQKIVRLAQLAKRSSMFDDPIREIQEMTALIKNDITSLNVAITDLQTIHNMETTERNYSEDRVVHSTAVCDDLKSRLMGATKQLQDVLTTRTENIKANESRRQIFSANASRESPFQNQPKTVTQPPPWSSNTSGSAQSPLLSSNGAQVGGQLRRRLAVENMNTPSQQMEMSMLQQVVPRQENYSQSRAVALHNVESTISELSGIFTHLATMVAHQGELAIRIDDNMDESLANVDGARSALLRHLNQISSNRWLLIKIFAILIIFLMVFIFLA 338
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 4666951 4669651 + ClG42_07g0041000.10 Clacu07g0410 253008
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu07g0410 338 Pfam SNARE domain 284 335 IPR000727 -
Clacu07g0410 338 SUPERFAMILY t-snare proteins 49 302 IPR010989 GO:0016020(InterPro)|GO:0016192(InterPro)
Clacu07g0410 338 SMART tSNARE_6 242 309 IPR000727 -
Clacu07g0410 338 CDD SNARE_syntaxin5 250 335 - -
Clacu07g0410 338 Gene3D - 48 302 - -
Clacu07g0410 338 MobiDBLite consensus disorder prediction 30 47 - -
Clacu07g0410 338 ProSitePatterns Syntaxin / epimorphin family signature. 253 292 IPR006012 GO:0005484(InterPro)|GO:0006886(InterPro)|GO:0016020(InterPro)
Clacu07g0410 338 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 247 309 IPR000727 -
Clacu07g0410 338 PANTHER SYNTAXIN 55 329 IPR045242 GO:0000139(PANTHER)|GO:0000149(PANTHER)|GO:0005484(PANTHER)|GO:0006886(PANTHER)|GO:0006888(PANTHER)|GO:0006906(PANTHER)|GO:0012505(PANTHER)|GO:0016021(PANTHER)|GO:0031201(PANTHER)|GO:0048278(PANTHER)
Clacu07g0410 338 Pfam Syntaxin-5 N-terminal, Sly1p-binding domain 6 21 IPR021538 -
Clacu07g0410 338 MobiDBLite consensus disorder prediction 173 215 - -
Clacu07g0410 338 MobiDBLite consensus disorder prediction 28 48 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu07g0410 Clacu-Chr7:4666951 Clacu08g1440 Clacu-Chr8:24442216 3.00E-61 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu07g0410 K08490 - csv:101213786 585.104