Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu07g0425 ATGGCTTCAATCTCTTCCAGCCCTCGTTCCGTTGAAGACATCTTCAAGGATTACAACGCTCGACGCACAGGCCTTGTGCGAGCCCTCACTTATGATGTCGATGAGTTCTACTCGCTTTGCGATCCTGAGAAGGAGAATTTGTGTTTGTATGGACATCCGAATGAGTCTTGGGAGGTGACTCTGCCTGCCGAGGAAGTTCCATCCGAGCTCCCTGAACCCGCGTTGGGGATCAATTTTGCAAGAGATGGGATGAAGCGTAGAGACTGGCTTTCGTTGGTGGCTGTGCACAGCGATTGTTGGTTGCTTTCAGTGGCGTTCTATTTTGGTGCTCAACTCAACCGTAATGAGCGGAAGCGCCTATTTAGTATGATTAATGATCTACCCACTCTATTTGAAGTTGCATCTGGAAGGAAATCTGTTAAAGACAAACCCAGTATGGATAGTGGAAGTAAATCCAGAAACAGCACAAAGAGGTCACTAGATGGGTCGATTCGAAACAGCAATCCGAAGCTACTCGAAGAGAGTTATGGAGAGGACGAAGATGAGCACGGTGATACGCTCTGTGGGAGCTGTGGTGGGAACTACAACGCAGACGAGTTTTGGATTGGATGTGACATCTGTGAGAGGTGGTACCATGGGAAATGTGTGAGGATAACACCTGCCAAGGCTGAGAATATCAAGCAATACAAATGCCCCTCTTGCAGCACAAAGAGGGGAAGACCGTAG 726 48.35 MASISSSPRSVEDIFKDYNARRTGLVRALTYDVDEFYSLCDPEKENLCLYGHPNESWEVTLPAEEVPSELPEPALGINFARDGMKRRDWLSLVAVHSDCWLLSVAFYFGAQLNRNERKRLFSMINDLPTLFEVASGRKSVKDKPSMDSGSKSRNSTKRSLDGSIRNSNPKLLEESYGEDEDEHGDTLCGSCGGNYNADEFWIGCDICERWYHGKCVRITPAKAENIKQYKCPSCSTKRGRP 241
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 4965003 4977737 + ClG42_07g0042500.10 Clacu07g0425 253023

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Clacu07g0425 241 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 177 236 IPR013083 -
Clacu07g0425 241 MobiDBLite consensus disorder prediction 138 169 - -
Clacu07g0425 241 Pfam Alfin 10 134 IPR021998 GO:0006355(InterPro)|GO:0042393(InterPro)
Clacu07g0425 241 CDD PHD_AL_plant 187 237 IPR044104 -
Clacu07g0425 241 ProSiteProfiles Zinc finger PHD-type profile. 185 237 IPR019787 -
Clacu07g0425 241 Pfam PHD-finger 188 234 IPR019787 -
Clacu07g0425 241 PANTHER CPG BINDING PROTEIN 7 240 IPR045104 GO:0000976(PANTHER)|GO:0003712(PANTHER)|GO:0005634(PANTHER)|GO:0006355(InterPro)|GO:0042393(InterPro)
Clacu07g0425 241 MobiDBLite consensus disorder prediction 149 169 - -
Clacu07g0425 241 ProSitePatterns Zinc finger PHD-type signature. 188 234 IPR019786 -
Clacu07g0425 241 SMART PHD_3 187 235 IPR001965 -
Clacu07g0425 241 SUPERFAMILY FYVE/PHD zinc finger 176 239 IPR011011 -
Clacu07g0425 241 FunFam PHD finger alfin-like protein 180 236 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu07g0425 K26274 - - csv:101211934 498.049
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu07g0425 Clacu-Chr7:4965003 Clacu09g0089 Clacu-Chr9:848848 1.20E-91 dispersed
Clacu10g2174 Clacu-Chr10:34875109 Clacu07g0425 Clacu-Chr7:4965003 2.00E-99 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi13g55 . Blo13g00799 . . . Bpe15g01161 . . Cmo04g00150 Cmo04g01181 Cma04g01114 Cma04g00152 Car04g00146 . . . Cpe01g00130 . . . . . . . Cla07g00398 Cam07g0425 Cec07g0477 Cco07g0433 Clacu07g0425 Cmu07g0469 Cre07g0775 . . . . . . Chy10g00423 Cme10g01083 . Blo04g00232 Bda14g00249 . . . . . . . . . . . . Cpe01g01035 . . . . . . . . . . . . . . . . Csa05g00818 . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Clacu10g0742 . 1 252 Alfin-like Transcription Factor Family AT1G14510 84.1 3.9e-114 407.9
Clacu11g0303 . 9 248 Alfin-like Transcription Factor Family AT1G14510 69.7 2.6e-94 342.0
Clacu08g1146 . 143 388 Alfin-like Transcription Factor Family AT1G14510 69.5 1.4e-92 336.3
Clacu09g0089 . 10 248 Alfin-like Transcription Factor Family AT1G14510 67.5 2.4e-92 335.5
Clacu07g0425 . 8 238 Alfin-like Transcription Factor Family AT1G14510 58.9 1.3e-77 286.6
Clacu10g2174 . 1 226 Alfin-like Transcription Factor Family AT1G14510 58.5 2.5e-73 272.3
Clacu11g0303 . 1 250 Alfin-like Transcription Factor Family AT5G26210 76.0 8.1e-112 400.2
Clacu08g1146 . 135 373 Alfin-like Transcription Factor Family AT5G26210 73.0 1.9e-100 362.5
Clacu09g0089 . 1 250 Alfin-like Transcription Factor Family AT5G26210 65.4 1.5e-97 352.8
Clacu10g0742 . 9 255 Alfin-like Transcription Factor Family AT5G26210 72.5 2.6e-94 342.0
Clacu07g0425 . 7 240 Alfin-like Transcription Factor Family AT5G26210 58.3 1.7e-80 296.2
Clacu10g2174 . 1 226 Alfin-like Transcription Factor Family AT5G26210 55.4 2.2e-72 269.2
Clacu11g0303 . 1 250 Alfin-like Transcription Factor Family AT3G42790 70.1 4.9e-101 364.4
Clacu09g0089 . 1 250 Alfin-like Transcription Factor Family AT3G42790 64.1 8.0e-96 347.1
Clacu08g1146 . 135 373 Alfin-like Transcription Factor Family AT3G42790 69.3 1.4e-92 336.3
Clacu10g0742 . 9 255 Alfin-like Transcription Factor Family AT3G42790 72.1 6.0e-91 330.9
Clacu07g0425 . 7 240 Alfin-like Transcription Factor Family AT3G42790 59.8 3.3e-81 298.5
Clacu10g2174 . 9 226 Alfin-like Transcription Factor Family AT3G42790 56.6 2.4e-71 265.8
Clacu07g0425 . 1 240 Alfin-like Transcription Factor Family AT5G05610 78.0 1.2e-112 402.9
Clacu10g2174 . 6 226 Alfin-like Transcription Factor Family AT5G05610 74.3 9.1e-97 350.1
Clacu11g0303 . 8 250 Alfin-like Transcription Factor Family AT5G05610 65.2 5.2e-92 334.3
Clacu09g0089 . 10 250 Alfin-like Transcription Factor Family AT5G05610 64.5 2.2e-90 328.9
Clacu08g1146 . 142 373 Alfin-like Transcription Factor Family AT5G05610 66.4 8.6e-87 317.0
Clacu10g0742 . 9 254 Alfin-like Transcription Factor Family AT5G05610 63.2 3.0e-84 308.5
Clacu07g0425 . 43 240 Alfin-like Transcription Factor Family AT3G11200 80.6 1.3e-95 346.3
Clacu10g2174 . 44 226 Alfin-like Transcription Factor Family AT3G11200 75.4 1.9e-78 289.3
Clacu09g0089 . 44 250 Alfin-like Transcription Factor Family AT3G11200 65.7 4.7e-74 274.6
Clacu11g0303 . 44 250 Alfin-like Transcription Factor Family AT3G11200 64.3 1.4e-73 273.1
Clacu08g1146 . 178 373 Alfin-like Transcription Factor Family AT3G11200 65.8 1.9e-70 262.7
Clacu10g0742 . 44 254 Alfin-like Transcription Factor Family AT3G11200 64.2 7.1e-70 260.8
Clacu10g0742 . 1 161 Alfin-like Transcription Factor Family AT2G02470 85.1 1.5e-76 283.1
Clacu11g0303 . 1 158 Alfin-like Transcription Factor Family AT2G02470 76.6 6.8e-66 247.7
Clacu08g1146 . 135 292 Alfin-like Transcription Factor Family AT2G02470 77.8 4.4e-65 245.0
Clacu09g0089 . 5 160 Alfin-like Transcription Factor Family AT2G02470 75.3 1.4e-63 240.0
Clacu10g2174 . 1 156 Alfin-like Transcription Factor Family AT2G02470 65.4 4.5e-54 208.4
Clacu07g0425 . 8 155 Alfin-like Transcription Factor Family AT2G02470 67.5 1.0e-53 207.2
Clacu08g1146 . 135 301 Alfin-like Transcription Factor Family AT5G20510 77.4 2.5e-73 271.9
Clacu11g0303 . 1 160 Alfin-like Transcription Factor Family AT5G20510 77.0 6.8e-71 263.8
Clacu09g0089 . 1 162 Alfin-like Transcription Factor Family AT5G20510 75.2 9.2e-68 253.4
Clacu10g0742 . 3 172 Alfin-like Transcription Factor Family AT5G20510 71.5 7.8e-67 250.4
Clacu07g0425 . 7 157 Alfin-like Transcription Factor Family AT5G20510 62.4 1.1e-52 203.4
Clacu10g2174 . 8 158 Alfin-like Transcription Factor Family AT5G20510 61.8 3.5e-51 198.4
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001062 3 2 2 5 5 2 4 2 3 2 2 2 3 2 2 4 2 2 4 3 2 2 2 3 3 3 2 3 3 2 81
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
48000 PF12165 Alfin 2.10E-67 No_clan Clacu TF