Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu07g0425 ATGGCTTCAATCTCTTCCAGCCCTCGTTCCGTTGAAGACATCTTCAAGGATTACAACGCTCGACGCACAGGCCTTGTGCGAGCCCTCACTTATGATGTCGATGAGTTCTACTCGCTTTGCGATCCTGAGAAGGAGAATTTGTGTTTGTATGGACATCCGAATGAGTCTTGGGAGGTGACTCTGCCTGCCGAGGAAGTTCCATCCGAGCTCCCTGAACCCGCGTTGGGGATCAATTTTGCAAGAGATGGGATGAAGCGTAGAGACTGGCTTTCGTTGGTGGCTGTGCACAGCGATTGTTGGTTGCTTTCAGTGGCGTTCTATTTTGGTGCTCAACTCAACCGTAATGAGCGGAAGCGCCTATTTAGTATGATTAATGATCTACCCACTCTATTTGAAGTTGCATCTGGAAGGAAATCTGTTAAAGACAAACCCAGTATGGATAGTGGAAGTAAATCCAGAAACAGCACAAAGAGGTCACTAGATGGGTCGATTCGAAACAGCAATCCGAAGCTACTCGAAGAGAGTTATGGAGAGGACGAAGATGAGCACGGTGATACGCTCTGTGGGAGCTGTGGTGGGAACTACAACGCAGACGAGTTTTGGATTGGATGTGACATCTGTGAGAGGTGGTACCATGGGAAATGTGTGAGGATAACACCTGCCAAGGCTGAGAATATCAAGCAATACAAATGCCCCTCTTGCAGCACAAAGAGGGGAAGACCGTAG 726 48.35 MASISSSPRSVEDIFKDYNARRTGLVRALTYDVDEFYSLCDPEKENLCLYGHPNESWEVTLPAEEVPSELPEPALGINFARDGMKRRDWLSLVAVHSDCWLLSVAFYFGAQLNRNERKRLFSMINDLPTLFEVASGRKSVKDKPSMDSGSKSRNSTKRSLDGSIRNSNPKLLEESYGEDEDEHGDTLCGSCGGNYNADEFWIGCDICERWYHGKCVRITPAKAENIKQYKCPSCSTKRGRP 241
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 4965003 4977737 + ClG42_07g0042500.10 Clacu07g0425 253023
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu07g0425 241 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 177 236 IPR013083 -
Clacu07g0425 241 MobiDBLite consensus disorder prediction 138 169 - -
Clacu07g0425 241 Pfam Alfin 10 134 IPR021998 GO:0006355(InterPro)|GO:0042393(InterPro)
Clacu07g0425 241 CDD PHD_AL_plant 187 237 IPR044104 -
Clacu07g0425 241 ProSiteProfiles Zinc finger PHD-type profile. 185 237 IPR019787 -
Clacu07g0425 241 Pfam PHD-finger 188 234 IPR019787 -
Clacu07g0425 241 PANTHER CPG BINDING PROTEIN 7 240 IPR045104 GO:0000976(PANTHER)|GO:0003712(PANTHER)|GO:0005634(PANTHER)|GO:0006355(InterPro)|GO:0042393(InterPro)
Clacu07g0425 241 MobiDBLite consensus disorder prediction 149 169 - -
Clacu07g0425 241 ProSitePatterns Zinc finger PHD-type signature. 188 234 IPR019786 -
Clacu07g0425 241 SMART PHD_3 187 235 IPR001965 -
Clacu07g0425 241 SUPERFAMILY FYVE/PHD zinc finger 176 239 IPR011011 -
Clacu07g0425 241 FunFam PHD finger alfin-like protein 180 236 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu07g0425 Clacu-Chr7:4965003 Clacu09g0089 Clacu-Chr9:848848 1.20E-91 dispersed
Clacu10g2174 Clacu-Chr10:34875109 Clacu07g0425 Clacu-Chr7:4965003 2.00E-99 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
48000 PF12165 Alfin 2.10E-67 No_clan Clacu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu07g0425 K26274 - csv:101211934 498.049