Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu07g0433 ATGTGCAGTGGCTCTAAGAATAAAGTTGCTTCCTCGAATTCCGCCATGGAAGCTAGGTTTCTGAAGCTTAGCGAGGGGGCTTTGTTCTCCGCGAATTCAATCTTGCTTGAACTATCAGCCTCTGATGATGTAGAAGGGTTCAAGAGAGAGGTTGAAGAAAAGGATTTGGATGTTGATGAGCCAAGCTGCTGGTATGGAAGAGGAATTGGGTCAAAGAAGATGGGTTTTGAAGAAAGAACTCCATTGATGATTGCTGCCATGTTTGGAAGCTCCAAGGTTGTCAAGTACTTAATTGAGACGGGCAAAGTTGATGTCAACAGGGCTTGTGGTTCAGATTTGACCACTGCCCTTCACTGTGCCACTGCTGGTGGCTCTTGTTCTTCCCTTGAGACCATCAAGCTCTTGCTAGATGGATCTGCTGACGTCGATTGTGTCGATGCCTATGGGAGAAAACCTGTCGATTTGATTGTTTCATCTTGCAGGATTGTGCTCAATTCGGGAAGAAAGGCTATGGAGATGTTGTTGAGAGGAGATGGTATGGCTGGGGAAGGTGATCTGAGTCTTTACCTTGAAGAAGACCAGCAGAAGATCACAGCCTCCCAATCTGCAAAAGAAGGAAGTGACAAGAAAGAGTATCCAGTTGATGTATCGCTGCCTGACATCAACAGCGGGATATACGGTACCGATGATTTCAGGATGTATACATTCAAAGTGAAGCCTTGTTCGAGGGCGTATTCACACGATTGGACCGAGTGCCCTTTTGTTCATCCTGGCGAGAACGCTAGGCGTAGAGACCCCAGGAAGTACCCGTATAGTTGCGTCCCGTGCCCTGAATTCCGGAAGGGGGCTTGCCCAAAGGGAGATTCCTGTGAGTATGCACATGGTGTTTTTGAGTCTTGGCTCCACCCTGCTCAATACCGAACCCGGCTCTGTAAGGATGAGACTGGCTGCACAAGAAAAGTCTGCTTCTTTGCTCACAAACCTGATGAGTTGCGCCCTGTGTATGCATCAACAGGCTCAGGCATGCCCTCACCTAGGTCTCTTTCGAGCAGTGCTGCAGATATGTCTACCATGAGCCCGCTTGCTCTTGGTTCATCATCGTTGTCCTTGCCGACTACCTCAACACCTCCCATGTCTCCCTTAGCATCAGTGTCTTCCCCGAAAAATGGGAACTTGTGGCAGAACAAGATTAACCTTACCCCTCCTGTTCTGCAGCTCCCTGGTAGCCGGTTAAAGGCCACCTTGAGCGCAAGAGATTTGGATTTGGAGATGGAATTGCTCGGGTTAGAAAAGAATGCGAGCCAATTACAACATCAACAACAGTTGATCGACGAGATAGCCCGGCTCTCCTCTCCTTCTTACTGGAGTGCAGATGTAAGCAGGAGTGCAGAGTTGAAGCCAGCAAACCTCGATGACATGTTTGGATCATTAGATTCTTCCTTATTGTCTCAGTTGCAAGGCACCTCGCTAAAGACGCCAATCTCAGCTCAAGTTCAATCTCCAACTGGGCTGCATATGCGCCAAAACATCAACCAACTCCGTGCAAGTTACCCAGCTAACCTATCTTCCTCACCTGTAAAGAAACCCACTTCTTTTGGCTTTGACTCATCAAGTGCAGTGGCAGCTGCAGTTATGAACTCAAGGTCTGCTGCCTTTGCTAAACGAAGCCAGAGTTTCATCGATCGAGCTGCAGTGACTCGTCTTCCTGGGTTTACCGGAGCTGCAAATTCTGCAGCTACAATGTCTTCCCATCTCTCTGATTGGAACTCGCCTGATGGAAAACTAGACTGGGGAGTGCATGGCAACGATCTCAACAAACTCAAGAAATCTGCTTCGTTTGGGATCCGAAACAACGGCATCGGAACTCCCACATTTGCTCCACCAGTAGAGGAGCCTGATGTCTCTTGGGTCAACTCCTTGGTCAAAGACGTTCCATCGGAAAGCTTCGGGCTGTTCGGTGCCGAGAAGCGTCCATACAGCCTCAAAAGAGAAATCAACGAGACGCTCCCATCCTGGATGGAGCAGCAGTTGTATGCAGAGCAGGAGCAGATAGTGGCATAA 2061 48.86 MCSGSKNKVASSNSAMEARFLKLSEGALFSANSILLELSASDDVEGFKREVEEKDLDVDEPSCWYGRGIGSKKMGFEERTPLMIAAMFGSSKVVKYLIETGKVDVNRACGSDLTTALHCATAGGSCSSLETIKLLLDGSADVDCVDAYGRKPVDLIVSSCRIVLNSGRKAMEMLLRGDGMAGEGDLSLYLEEDQQKITASQSAKEGSDKKEYPVDVSLPDINSGIYGTDDFRMYTFKVKPCSRAYSHDWTECPFVHPGENARRRDPRKYPYSCVPCPEFRKGACPKGDSCEYAHGVFESWLHPAQYRTRLCKDETGCTRKVCFFAHKPDELRPVYASTGSGMPSPRSLSSSAADMSTMSPLALGSSSLSLPTTSTPPMSPLASVSSPKNGNLWQNKINLTPPVLQLPGSRLKATLSARDLDLEMELLGLEKNASQLQHQQQLIDEIARLSSPSYWSADVSRSAELKPANLDDMFGSLDSSLLSQLQGTSLKTPISAQVQSPTGLHMRQNINQLRASYPANLSSSPVKKPTSFGFDSSSAVAAAVMNSRSAAFAKRSQSFIDRAAVTRLPGFTGAANSAATMSSHLSDWNSPDGKLDWGVHGNDLNKLKKSASFGIRNNGIGTPTFAPPVEEPDVSWVNSLVKDVPSESFGLFGAEKRPYSLKREINETLPSWMEQQLYAEQEQIVA 686
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 5219653 5221713 + ClG42_07g0043300.10 Clacu07g0433 253031
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu07g0433 686 ProSiteProfiles Ankyrin repeat profile. 112 147 IPR002110 GO:0005515(InterPro)
Clacu07g0433 686 Pfam Ankyrin repeats (3 copies) 77 144 IPR002110 GO:0005515(InterPro)
Clacu07g0433 686 MobiDBLite consensus disorder prediction 340 385 - -
Clacu07g0433 686 Gene3D - 30 172 IPR036770 -
Clacu07g0433 686 ProSiteProfiles Zinc finger C3H1-type profile. 270 297 IPR000571 GO:0046872(InterPro)
Clacu07g0433 686 ProSiteProfiles Ankyrin repeat region circular profile. 77 101 - -
Clacu07g0433 686 Gene3D - 271 333 - -
Clacu07g0433 686 SMART ANK_2a 77 107 IPR002110 GO:0005515(InterPro)
Clacu07g0433 686 SMART ANK_2a 112 144 IPR002110 GO:0005515(InterPro)
Clacu07g0433 686 SMART c3hfinal6 270 296 IPR000571 GO:0046872(InterPro)
Clacu07g0433 686 SMART c3hfinal6 305 328 IPR000571 GO:0046872(InterPro)
Clacu07g0433 686 ProSiteProfiles Ankyrin repeat profile. 77 101 IPR002110 GO:0005515(InterPro)
Clacu07g0433 686 MobiDBLite consensus disorder prediction 334 385 - -
Clacu07g0433 686 FunFam Zinc finger CCCH domain-containing protein 66 228 296 - -
Clacu07g0433 686 PANTHER UNKEMPT FAMILY MEMBER 74 643 IPR045234 -
Clacu07g0433 686 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 274 295 IPR000571 GO:0046872(InterPro)
Clacu07g0433 686 SUPERFAMILY Ankyrin repeat 68 159 IPR036770 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu07g0433 Clacu-Chr7:5219653 Clacu10g1697 Clacu-Chr10:30470450 1.50E-131 dispersed
Clacu02g2003 Clacu-Chr2:33467843 Clacu07g0433 Clacu-Chr7:5219653 3.90E-209 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
48001 PF12796 Ank_2 2.50E-09 CL0465 Clacu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu07g0433 - - - 0.0