Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Clacu07g0441 | ATGTTCGCAGTTGCAGTGCCGAAGACGACGATGACTCCGTTATTCTCATCTCCAAAGCTCCCTTCACTACTCTACAAGTCCTCCTCTCTCAATTCTTCTTCTTCTTCTTCTTCTTCTTCGTCTTCATCGCCGAGATCGTTGTCCAGTCCGAGGAATCTTCATGTTTCTGCATCGTCGTCGCCGTCGTCTGTTGATACGGTTTTGAAGAGGAAGAGGCCGGCGAGAATCGACGTGCCGCCGAGTATGCCGTCGATTGGATTTGAATTTGGAATATTCGAGACGCCGGAGGTGATGGAGGAGGAAGGAGAAGGATATTCTGTTTATTGTAAAAGAGGAAGAAGACGGATCAGCGCTATAGAGGATCGATTCTCAGCTACCGTCGGAATTCAAGGAGATTCTCGCCAGGCTTTCTTCGGAGTTTTCGACGGACACGGCGGAGCAAAAGTGGCGGAAATCGCAGCGAAAAGAATGAGCGAGAATGTAATCGATCAAGTAGCGAGAAGAACAGAGTCGGAACTGGAGGAAGCAATCAAAGACGGCTATCTGACGACGGATCGGGAAGTATCGGAGGAAGGCGTGAGCGGCGGCGGAGCTTGTTGCGTGACTGCATTGATACGGAACGGAAATCTGGCAGTCTCCAACGTTGGCGATTGTCGTGCTGTGTTGAGCAGAAAGGGAAAAGCGGAAGCCCTAACTTCGGATCACAGGGCGTGCAGAGAAGACGAGAGAAATCGGATCGAAAAATCGGGAGGTTATGTAGATTGTTGCGGTGGTGGATGGAGAGTTCAAGGAACACTGGCTGTATCTCGAGCCATTGGAGACGAGCATCTGAAACAGTGGGTGATATCGGAGCCGGAGACGAGAGTGATGAAGATCGAGGATGATTGTCATTTCTTGATCCTTGCTTCTGATGGTCTTTGGGACAAGGTTACAAATCAGGAAGCAGTAGACATAGTAGAGGCAGTATGCGGCGTAGAGATAATGAAGAAGAAACCAAATCCGGCATTAATAATGTCGGCCTGCAAACAGTTGGCGACTTTGTCAACATCAAGAGGCTCAATCGACGATACCACTGTTATGATCATCAAACTAAGTTCCCTTTTTCATTCCTCAACCTCAATTAATCATCATCATTAA | 1137 | 48.37 | MFAVAVPKTTMTPLFSSPKLPSLLYKSSSLNSSSSSSSSSSSSPRSLSSPRNLHVSASSSPSSVDTVLKRKRPARIDVPPSMPSIGFEFGIFETPEVMEEEGEGYSVYCKRGRRRISAIEDRFSATVGIQGDSRQAFFGVFDGHGGAKVAEIAAKRMSENVIDQVARRTESELEEAIKDGYLTTDREVSEEGVSGGGACCVTALIRNGNLAVSNVGDCRAVLSRKGKAEALTSDHRACREDERNRIEKSGGYVDCCGGGWRVQGTLAVSRAIGDEHLKQWVISEPETRVMKIEDDCHFLILASDGLWDKVTNQEAVDIVEAVCGVEIMKKKPNPALIMSACKQLATLSTSRGSIDDTTVMIIKLSSLFHSSTSINHHH | 378 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 7 | 5333569 | 5335489 | + | ClG42_07g0044100.10 | Clacu07g0441 | 253039 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Clacu07g0441 | 378 | Gene3D | - | 98 | 370 | IPR036457 | - | |
| Clacu07g0441 | 378 | Pfam | Protein phosphatase 2C | 126 | 355 | IPR001932 | - | |
| Clacu07g0441 | 378 | PANTHER | PROTEIN PHOSPHATASE | 96 | 362 | IPR015655 | GO:0004722(InterPro)|GO:0004722(PANTHER)|GO:0006470(InterPro)|GO:0035970(PANTHER) | |
| Clacu07g0441 | 378 | MobiDBLite | consensus disorder prediction | 26 | 66 | - | - | |
| Clacu07g0441 | 378 | MobiDBLite | consensus disorder prediction | 1 | 20 | - | - | |
| Clacu07g0441 | 378 | ProSitePatterns | PPM-type phosphatase domain signature. | 137 | 145 | IPR000222 | GO:0043169(InterPro) | |
| Clacu07g0441 | 378 | ProSiteProfiles | PPM-type phosphatase domain profile. | 104 | 364 | IPR001932 | - | |
| Clacu07g0441 | 378 | MobiDBLite | consensus disorder prediction | 26 | 75 | - | - | |
| Clacu07g0441 | 378 | CDD | PP2Cc | 104 | 364 | IPR001932 | - | |
| Clacu07g0441 | 378 | SUPERFAMILY | PP2C-like | 104 | 365 | IPR036457 | - | |
| Clacu07g0441 | 378 | SMART | PP2C_4 | 97 | 362 | IPR001932 | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Clacu03g0064 | Clacu-Chr3:801336 | Clacu07g0441 | Clacu-Chr7:5333569 | 1.80E-94 | dispersed | |
| Clacu07g0441 | Clacu-Chr7:5333569 | Clacu11g1011 | Clacu-Chr11:12123125 | 9.60E-69 | dispersed | |
| Clacu07g0441 | Clacu-Chr7:5333569 | Clacu03g0119 | Clacu-Chr3:1341008 | 1.20E-29 | transposed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Clacu07g0441 | K17506 | - | csv:101208170 | 546.199 |