Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu07g0465 ATGGGTGGCAATTCACCGTGCGCCTCGTGCAAACTCCTCCGGCGACGGTGCGCCAAAGACTGCATTTTTGCTCCCTATTTTCCCTCTGATGACCCCCACAAGTTTGCTATTGTCCATAAAGTTTTTGGTGCCAGCAATGTCAGCAAAATGTTGCAGGAACTGCCAGTGCAGCAAAGAGGCGACGCCGTGATGAGTTTAGTTTATGAGGCAAGTGCAAGAGTGAGGGACCCAGTTTATGGTTGTGTAGGGGCAATTTCGTACTTACAAAATCAAGTTTCACAACTACAAATGCAATTGGCTGTGGCTCAAGCTGAGATTCTTTGCATCCAAATGCAACAAGACAACCCCGTTTTCCCAAATTGCCCTCAGATCCACTCCGATGACAAACCCTCCTCTCTTCTACTCCCGCCGCCGTCTCCTCCGCCCTCTCAGTGCCTCAATTTTGCTTCCTCTCCCAATGTAATTTATGACACCATTTTTGGACATGACATAGTTTCTTAA 501 47.9 MGGNSPCASCKLLRRRCAKDCIFAPYFPSDDPHKFAIVHKVFGASNVSKMLQELPVQQRGDAVMSLVYEASARVRDPVYGCVGAISYLQNQVSQLQMQLAVAQAEILCIQMQQDNPVFPNCPQIHSDDKPSSLLLPPPSPPPSQCLNFASSPNVIYDTIFGHDIVS 166
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 5665260 5666199 + ClG42_07g0046500.10 Clacu07g0465 253063
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu07g0465 166 Coils Coil 85 105 - -
Clacu07g0465 166 ProSiteProfiles LOB domain profile. 5 106 IPR004883 -
Clacu07g0465 166 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 4 115 - -
Clacu07g0465 166 Pfam Lateral organ boundaries (LOB) domain 6 103 IPR004883 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu01g0907 Clacu-Chr1:10716741 Clacu07g0465 Clacu-Chr7:5665260 1.50E-45 dispersed
Clacu02g1901 Clacu-Chr2:32536253 Clacu07g0465 Clacu-Chr7:5665260 2.60E-45 dispersed
Clacu03g0241 Clacu-Chr3:2828966 Clacu07g0465 Clacu-Chr7:5665260 2.20E-36 dispersed
Clacu03g0243 Clacu-Chr3:2857378 Clacu07g0465 Clacu-Chr7:5665260 8.90E-37 dispersed
Clacu07g0465 Clacu-Chr7:5665260 Clacu09g2278 Clacu-Chr9:37532957 6.00E-39 dispersed
Clacu05g0922 Clacu-Chr5:8156885 Clacu07g0465 Clacu-Chr7:5665260 2.40E-31 transposed
Clacu11g0751 Clacu-Chr11:7346825 Clacu07g0465 Clacu-Chr7:5665260 2.90E-33 wgd
Clacu02g1981 Clacu-Chr2:33308002 Clacu07g0465 Clacu-Chr7:5665260 1.60E-49 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
48003 PF03195 LOB 3.70E-42 No_clan Clacu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu07g0465 - - - 0.0