Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu07g0483 ATGGATGAAACTCAAACCCCATTTCATTTTACCTCTTTTTGGAGATACCCATTTGGGGATTCTGGGGTTTTCTTCACTCACTCTCCTGATCGGCTCTGTTTTTCACATAAGAAGAAGGGGAAATGGAAGGTTCTGAGGAAAAACCCTAATGGGTTTGTTTCTGGTGGATTGGGTTTGTGGTTTTTGTTGCTTAATTTGGTTTTTATTCCACCTGTTTTTAGCCAGGATTGGGATGGTGTGGTTGTAACTCAGGCTGATTTTCAATCCCTTCAGGCATTTAAGCAAGAGCTTGATGACCCTAAAGGGTTTTTGAAGAGTTGGAATGATAGTGGATTTGGAGCTTGTTCTGGTGGTTGGGCTGGGATTAAATGTGCTAAAGGACAGGTTATTGTAATACAGCTTCCTTGGAAGGGATTAGGAGGAAGAATCACTGAGAAGATTGGCCAACTTCAGGCACTTAGGAAGCTCAGTTTACATGACAACTTCATTGGTGGATCAATCCCTTCTTCATTGGGGCTTCTTCCAAATCTTAGAGGGGTTCAGTTGTTCAATAATCGATTTTCTGGTTCGATCCCGGCTTCATTGGGACTTTGTCCTTTGCTTCAAACTCTTCACATTAGTAACAATTTGCTCACTGGAACAATCCCACCTACTTTGGCGAACTCCACCAAGCTTTATTGGCTTAACTTGAGCTTTAACTCGTTTTCGGGTCCGATTCCATCGAGTCTTGCTCGCTCGGTGTCCCTTACTTTCCTTGCTCTTCAACATAACAATCTCTCAGGCAGCATTCCCGACTCTTGGGGGGGCGATGTCACCGAGCGAAACCGGGTGTTTCAGCTCAAGTCTCTGACTCTTGATGGCAATCTCCTCTCAGGTACCATACCAATTTCTTTAAGCAAGTTAAGTGAGCTTCAAGTGGTTTCCCTTAGCCACAATAGGTTAAATGGTGGCATTCCAGAAGAAATTAGTAAGCTTTCTCTGCTGAAAACTCTGGATGTTTCTAATAATTTCCTTAATGGAAGTTTGCCCCAAAGTTTTGATAAATTGAGAAAACTCTCTATTCTCAACTTGAGTAGAAACAGACTCAATGGTGAAATTCCTGCAACTTTAGGGAACATTTCAACTCTTACACAACTTGATTTATCTAAGAACAATCTAAGTGGAGAAATACCAGCTTCTCTTGCTGATTTGCAAGGTCTTCAATCCTTAAATGTCTCATACAACGACCTTTCGGGTTCAGTTCCTCCCGCTCTCGCTGAAAAATTTGCTGCAAGTTCCTTTGTTGGGAACATTCAGCTCTGTGGGTTCAGTGGTTCGATTCGGTGCCCGTCCCCGGCCCCTTCTGAAGAAGCTCCTGCTCCTCCACCAGAAAGTATGACAACCCACCATCGGAAGTTAAGTACTAAAGATATAATCCTCATAGCAGCAGGAGCCCTCCTTGTAGTATTGGTTATAGTTTTCTTTGTATTGCTCTGCTGCTTGATTAGGAAAAGGGCTGCTACAAAAGGAAAGGATGGTGGTGAGGCTGCAGCAGCTGGGGGTGCTAGGGTCGAGAAGGGTGTCCCTCCGACGAGCAGTGAAGTCGAAGCAGGAGCAGGGGATGCTGGTGGAAAGCTCGTCCATTTCGACGGGCAAACAGTCTTCACAGCAGATGATCTTTTGTGTGCAACAGCAGAAATAATGGGAAAGAGTACTTATGGGACTGTTTACAAGGCCACATTGGAGGATGGAAATCAAGTTGCAGTGAAGAGATTGAGAGAGAAAATCACTAAGAGCCAAAAGGAATTTGAAGCAGAGGTTAACATACTTGGTAAGATCAGGCATCCAAATTTACTAGCCTTGAGAGCTTATTACTTGGGACCCAAAGGAGAAAAGCTTCTAGTTTTCGATTACATGCCGAACGGGAGTCTTGCAGCGTTCCTGCACGCTCGTGGACCAGACACATCCATTGATTGGCCGACAAGGATGAAGATAGCTCAGGGTATGACGCGTGGCCTGTGCCATCTTCACACGCACGAGAACAGTATCCATGGAAACCTAACATCCAGCAACATTCTACTTGATGAGTACATTAATGCTAAGATTGCAGATTTTGGCTTGTCAAGGTTGATGACTGCAGCTGCAAGCTCAAATGTGATAGCAACAGCAGGGGCACTGGGGTACCGAGCACCAGAGCTCTCAAAGCTGAAAAAAGCAAACACGAAAACCGACATTTACAGCCTTGGAGTAATCATACTGGAACTCTTGACTGGTAAATCCCCTGGTGAAGCCATGAACGGAGTCGATTTGCCACAATGGGTTGCATCGATCGTCAAAGAGGAGTGGACTAATGAAGTTTTTGATTTGGAGCTGATGAGGGATGCATCTACAATCGGTGATGAGTTACTAAACACTCTGAAACTTGCTTTGCATTGTGTCGACCCTTCACCGTCAGCGAGACCGGAAGTTCAACAAGTTTTGCAACAACTGGAGGAGATTAGGCCAGAAACTGCTCCAAGTTCTGGGGATGATGGAGCAGGAGGAGGAGGAGCCCCTTCAACAAGTGAGTGA 2550 44.98 MDETQTPFHFTSFWRYPFGDSGVFFTHSPDRLCFSHKKKGKWKVLRKNPNGFVSGGLGLWFLLLNLVFIPPVFSQDWDGVVVTQADFQSLQAFKQELDDPKGFLKSWNDSGFGACSGGWAGIKCAKGQVIVIQLPWKGLGGRITEKIGQLQALRKLSLHDNFIGGSIPSSLGLLPNLRGVQLFNNRFSGSIPASLGLCPLLQTLHISNNLLTGTIPPTLANSTKLYWLNLSFNSFSGPIPSSLARSVSLTFLALQHNNLSGSIPDSWGGDVTERNRVFQLKSLTLDGNLLSGTIPISLSKLSELQVVSLSHNRLNGGIPEEISKLSLLKTLDVSNNFLNGSLPQSFDKLRKLSILNLSRNRLNGEIPATLGNISTLTQLDLSKNNLSGEIPASLADLQGLQSLNVSYNDLSGSVPPALAEKFAASSFVGNIQLCGFSGSIRCPSPAPSEEAPAPPPESMTTHHRKLSTKDIILIAAGALLVVLVIVFFVLLCCLIRKRAATKGKDGGEAAAAGGARVEKGVPPTSSEVEAGAGDAGGKLVHFDGQTVFTADDLLCATAEIMGKSTYGTVYKATLEDGNQVAVKRLREKITKSQKEFEAEVNILGKIRHPNLLALRAYYLGPKGEKLLVFDYMPNGSLAAFLHARGPDTSIDWPTRMKIAQGMTRGLCHLHTHENSIHGNLTSSNILLDEYINAKIADFGLSRLMTAAASSNVIATAGALGYRAPELSKLKKANTKTDIYSLGVIILELLTGKSPGEAMNGVDLPQWVASIVKEEWTNEVFDLELMRDASTIGDELLNTLKLALHCVDPSPSARPEVQQVLQQLEEIRPETAPSSGDDGAGGGGAPSTSE 849
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 5942025 5944676 - ClG42_07g0048300.10 Clacu07g0483 253081
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu07g0483 849 SUPERFAMILY Protein kinase-like (PK-like) 559 827 IPR011009 -
Clacu07g0483 849 Pfam Leucine Rich Repeat 400 419 IPR001611 GO:0005515(InterPro)
Clacu07g0483 849 Pfam Leucine Rich Repeat 225 244 IPR001611 GO:0005515(InterPro)
Clacu07g0483 849 Pfam Leucine Rich Repeat 376 397 IPR001611 GO:0005515(InterPro)
Clacu07g0483 849 Pfam Leucine Rich Repeat 248 268 IPR001611 GO:0005515(InterPro)
Clacu07g0483 849 Pfam Leucine Rich Repeat 351 372 IPR001611 GO:0005515(InterPro)
Clacu07g0483 849 Pfam Leucine Rich Repeat 201 221 IPR001611 GO:0005515(InterPro)
Clacu07g0483 849 Pfam Leucine Rich Repeat 153 172 IPR001611 GO:0005515(InterPro)
Clacu07g0483 849 FunFam protein STRUBBELIG-RECEPTOR FAMILY 3 83 265 - -
Clacu07g0483 849 Pfam Protein tyrosine and serine/threonine kinase 558 823 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Clacu07g0483 849 ProSiteProfiles Protein kinase domain profile. 555 826 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu07g0483 849 Gene3D Phosphorylase Kinase; domain 1 561 632 - -
Clacu07g0483 849 CDD STKc_IRAK 561 826 - -
Clacu07g0483 849 MobiDBLite consensus disorder prediction 505 531 - -
Clacu07g0483 849 SUPERFAMILY L domain-like 123 418 - -
Clacu07g0483 849 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 268 446 - -
Clacu07g0483 849 Gene3D Ribonuclease Inhibitor 82 233 IPR032675 -
Clacu07g0483 849 Gene3D Ribonuclease Inhibitor 234 335 IPR032675 -
Clacu07g0483 849 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE IMK3-RELATED 71 837 IPR052451 -
Clacu07g0483 849 Gene3D Ribonuclease Inhibitor 336 436 IPR032675 -
Clacu07g0483 849 Pfam Leucine rich repeat 279 336 IPR001611 GO:0005515(InterPro)
Clacu07g0483 849 Pfam Leucine rich repeat N-terminal domain 85 124 IPR013210 -
Clacu07g0483 849 FunFam Leucine-rich repeat receptor-like protein kinase 540 631 - -
Clacu07g0483 849 Gene3D Transferase(Phosphotransferase) domain 1 633 836 - -
Clacu07g0483 849 MobiDBLite consensus disorder prediction 825 849 - -
Clacu07g0483 849 SMART LRR_typ_2 150 174 IPR003591 -
Clacu07g0483 849 SMART LRR_typ_2 397 421 IPR003591 -
Clacu07g0483 849 SMART LRR_typ_2 325 348 IPR003591 -
Clacu07g0483 849 SMART LRR_typ_2 349 373 IPR003591 -
Clacu07g0483 849 SMART LRR_typ_2 301 324 IPR003591 -
Clacu07g0483 849 FunFam Pollen receptor-like kinase 1 632 836 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu07g0483 Clacu-Chr7:5942025 Clacu10g2204 Clacu-Chr10:35105597 3.50E-159 dispersed
Clacu07g0483 Clacu-Chr7:5942025 Clacu06g1126 Clacu-Chr6:21347586 4.40E-69 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
73684 PF07714 PK_Tyr_Ser-Thr 1.50E-40 CL0016 Clacu PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu07g0483 - - - 0.0