Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu07g0502 ATGGGAGCTTCTAGCCTCCCTTGTTTTTCATCGCTATTTGCAGTTTTTCCACTTCAAAATAATGCTCACAACAAATCTTTACCATTTTCTTCAAATCTTTCAAAACCTCTTTTCCGATTGAACAGGATTTGCTGCGGAGTCCCTGAGAGTGGAATTCAGCAAAACCCCTCAACTTCCAGACCTTCCTCTTCCAAGAACAGGATGGAAGAGTACAATTTGGCCATGAAGAAGATGATGAGGAACCCCTATGAATATCACCATGAACTGGGCATGAACTATACTGTGATAGCTGACAATTTGATCGTCGGTTCCCAGCCTCAGAAACCCGAAGATATCAATTTCTTGAAGGAGGAAGAAGGTGTTGCCTATATTCTGAATTTACAGCAGGACAAGGATGTCGAGTACTGGGGAATCGACTTACAATCAATTATAGAAAGATGTAAAGAAATTGGAATTCATCATATGAGGCAACCAGCAAAAGATTTTGATCCAGATTCCCTGAGAAATGGATTGCCTAAAGCTGTTTCCTTGTTAGAATGGGCGATCTCAGAGGGTAAAGGAAAAGTGTACGTGCATTGCACTGCTGGACTGGGAAGGGCCCCCGCCGTCGCAATAGCTTACCTGTACTGGTTTTGCGGAATGAATTTAAATACAGCATATGAAGCACTGACCTCTAAAAGACCTTGTGGACCAAATAAAAGAGCGATCCGCGGAGCCACATACGATCTATCTAAAAATGACCCATGGAAGGAGCCATTTGAGAAACTTGAGTTCATTGCTATTGAGAATAAGAGTTGGGATAGTAGAGTGTTGCACTTGATCTCTGCACAGAAATTTGGTTTCCTGATCTTGAAATTTTCTCTAGGCCAGGCAGAGGGATTTTCATTTTGTCTAATAATTATCTTGCTGTTTCCTAGGAAGATTGTAATTTTGTTTGTGTTTGATATATGA 951 41.11 MGASSLPCFSSLFAVFPLQNNAHNKSLPFSSNLSKPLFRLNRICCGVPESGIQQNPSTSRPSSSKNRMEEYNLAMKKMMRNPYEYHHELGMNYTVIADNLIVGSQPQKPEDINFLKEEEGVAYILNLQQDKDVEYWGIDLQSIIERCKEIGIHHMRQPAKDFDPDSLRNGLPKAVSLLEWAISEGKGKVYVHCTAGLGRAPAVAIAYLYWFCGMNLNTAYEALTSKRPCGPNKRAIRGATYDLSKNDPWKEPFEKLEFIAIENKSWDSRVLHLISAQKFGFLILKFSLGQAEGFSFCLIIILLFPRKIVILFVFDI 316
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 6193277 6196147 - ClG42_07g0050200.10 Clacu07g0502 253100
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu07g0502 316 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 169 228 IPR000387 GO:0016311(InterPro)
Clacu07g0502 316 Gene3D Protein tyrosine phosphatase superfamily 75 274 IPR029021 -
Clacu07g0502 316 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 84 234 IPR029021 -
Clacu07g0502 316 Pfam Dual specificity phosphatase, catalytic domain 116 229 IPR000340 GO:0016311(InterPro)
Clacu07g0502 316 CDD DSP_laforin-like 91 238 IPR045204 GO:0019203(InterPro)
Clacu07g0502 316 SMART dsp_5 92 242 IPR020422 GO:0006470(InterPro)
Clacu07g0502 316 ProSiteProfiles Dual specificity protein phosphatase domain profile. 92 249 IPR020422 GO:0006470(InterPro)
Clacu07g0502 316 PANTHER DUAL SPECIFICITY PHOSPHATASE, SUBGROUP, CATALYTIC DOMAIN 56 251 IPR052832 GO:0005983(PANTHER)|GO:0009507(PANTHER)|GO:0019203(PANTHER)|GO:0046838(PANTHER)|GO:2001070(PANTHER)
Clacu07g0502 316 FunFam Phosphoglucan phosphatase LSF2, chloroplastic 75 277 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu05g2338 Clacu-Chr5:31743429 Clacu07g0502 Clacu-Chr7:6193277 1.20E-37 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu07g0502 - - - 0.0