Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu07g0508 ATGTCCAAAGAAAGAGAGAGATTCGACGAGATAGCGAAGAAGATAAAGAGAGAGACAGATGTATCATCAAATATTCATCCCCAGCAAATTATGGGGAGAAGAACCTCATTGCAAGCTCCTCCTGGGACACTTAACACCATTACTCCATGTGCAGCCTGCAAGCTCTTAAGAAGAAGATGTGCTCAAGAATGCCCCTTCTCCCCATACTTCTCCCCTCATGAGCCTCATAAATTTGCCTCTGTCCACAAGGTTTTCGGCGCTAGCAACGTCTCCAAGATGCTCATGGAAGTTTCGGAGAATCAGAGAGCGGATGCTGCAAATAGCTTAGTTTATGAAGCTAATGTGAGGTTAAGAGATCCTGTTTATGGCTGTATGGGCGCCATTTCAGCCCTACAACACCAAATTCAAGCCTTACAAGCTGAGCTCAATGCAGTGAGAGCTGAGATTTTAAGACACAAATTTAGAGAAGCTAATAATATGATTCACTCTTCTCCTCAACAACAACATTTGCCTTTTCTTTCTTCTTCTACGGAGGTCGTTTCGGTCGCCGTGCCACCACCACCTCCGCCACCACCGCTACCTCCACCGCCTCATCATGATGCTTCTTCTTCTACTTCCTCCTTGTACAACCGACCGGTGGTGGCCGTGGCGGCTGATTATAGTACTATTTCAAGTGATGAAAATGTTCCCTACTTTGTTACTACTTCTAGTACTGCTCATCAATTGAATTCTTAG 735 45.17 MSKERERFDEIAKKIKRETDVSSNIHPQQIMGRRTSLQAPPGTLNTITPCAACKLLRRRCAQECPFSPYFSPHEPHKFASVHKVFGASNVSKMLMEVSENQRADAANSLVYEANVRLRDPVYGCMGAISALQHQIQALQAELNAVRAEILRHKFREANNMIHSSPQQQHLPFLSSSTEVVSVAVPPPPPPPPLPPPPHHDASSSTSSLYNRPVVAVAADYSTISSDENVPYFVTTSSTAHQLNS 244
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 6278713 6279958 + ClG42_07g0050800.10 Clacu07g0508 253106
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu07g0508 244 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 47 169 - -
Clacu07g0508 244 Pfam Lateral organ boundaries (LOB) domain 49 146 IPR004883 -
Clacu07g0508 244 ProSiteProfiles LOB domain profile. 48 149 IPR004883 -
Clacu07g0508 244 MobiDBLite consensus disorder prediction 182 199 - -
Clacu07g0508 244 Coils Coil 128 155 - -
Clacu07g0508 244 MobiDBLite consensus disorder prediction 177 208 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu07g0508 Clacu-Chr7:6278713 Clacu10g1381 Clacu-Chr10:26924184 5.50E-33 dispersed
Clacu11g0724 Clacu-Chr11:7107804 Clacu07g0508 Clacu-Chr7:6278713 6.90E-54 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
48005 PF03195 LOB 2.20E-40 No_clan Clacu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu07g0508 - - - 0.0