Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu07g0513 ATGGATGTTTTCAATATTCATTTCCAAAACACTTTGTCCTCCATTGAAGAACAACCTAGAAGGAATTTTGGACACCATTGTAGTTCACCTTGTGTTTGTTTGTGTGCATTCTTCTCTTCTTTGAAGAACAAAGGCCAAACGGGGAATACAGATGAGGGGTTTTCTCTTGGAGATCGAGATAAAGACGCTATGGATCTTGAGCATGGGAAGTGTTGGGATAGTTCAAAGAAGGATTCTTGGAAAACGGTTCTTGTATTGGCCTATCAAAGCCTTGGTGTCGTCTATGGCGATTTGAGCATCTCTCCTCTTTACGTTTACAGAAGCACTTTTGCTGAAGACATCCAACATTCAGATACCAATGAAGAAATCTATGGTGTTCTTTCATTTGTCTTCTGGACTCTCACTATAGTCCCCCTTTTCAAATACGTCTTTGTGGTTCTCAGAGCTGATGACAATGGCGAAGGTGGGACTTTTGCTCTGTACTCGTTAATTTGTAGACATGCCAAAGTAAGCCTTCTCCCCAACAGACAAGTTGCAGATGAAGCTCTTTCCACTTACTTGCTGGAACATCCACCAGAGAAGAAGAAGCAATCTAAGGTTAAATTGCTGCTGGAGAAGCACAGAGCTCTTCACACTTCCTTGTTGATTCTTGTTCTTCTAGGTACTTGTATGGTGATTGGAGACGGGCTTCTCACTCCTGCCATTTCTGTTTTCTCAGCAGTTTCTGGACTTGAGTTATCCATGTCCAAGGCTCACCATGAGTATGCAGTGGTTCCAATCACTTGCTTTATCTTGGTTTGTCTATTTGCACTTCAACACTACGGCACACATCGAGTTGGTTTTGTATTTGCCCCCATTGTATTGGCATGGCTACTCTGCATCAGCACCCTTGGCATATACAATATTATACACTGGAATCCACGTGTTTATCAGGCTCTTTCTCCATATTACATGTTCAAGTTTTTGGAGAAGACAAGGAAGAGCGGTTGGATGTCGTTGGGGGGTATATTGTTGTGTATAACAGGCTCGGAAGCGATGTTTGCTGATCTTGGTCACTTCTCATACACTGCAATACAGATTGCTTTCACTTTCCTGGTGTATCCAGCGCTTATATTGGCATACATGGGCCAAGCTGCTTACTTATCACAACATCACCATACCACCAAAAACATTGGCTTCTACGTTTCTGTTCCAGAGAGTGTGAGATGGCCAGTGCTTACAATTGCTATACTTGCGTCGGTTGTGGGAAGCCAAGCAATCATCAGCGGAACATTCTCCATTATTAACCAGAGCCAGTCCCTTGGGTGCTTCCCTAGGGTGAAGGTTGTTCATACTTCTGATAAGATCCATGGCCAGATATACATTCCAGAGATAAATTGGATTCTTATGATTCTCTGTGTCGCCGTTACCATTGGATTTAGGGACATAAAACACCTCGGAAATGCTTCAGGTCTGGCTGTAATGACTGTGATGCTTGTGACAACCTGTCTTACGTCTTTGGTGATTGTCCTGTGTTGGAACAAATCTCCACTCTTGGCCCTCTCCTTTTTGATTTTCTTTGGGTCTGTTGAATTGCTCTACTTCTCAGCTTCACTCACCAAGTTCAGGGAGGGCGCTTGGCTCCCCATTCTTTTAGCTCTCTTCCTCATGACCATCATGTTTGTTTGGCACTATGCAACCATCAAGAAGTATGAATTTGATCTCCACAACAAGGTTTCATTAGAATGGTTACTAGCATTGGGGCCAAGCCTTGGGATTGCACGTGTCCCCGGCATTGGATTAGTCTTCACTGATCTCACTTCTGGCATCCCTGCCAACTTCTCTCGGTTTGTCACCAACCTCCCGGCATTTCATCGGATTCTTGTCTTTGTATGCATAAAGTCAGTACCAGTTCCTTTTGTACCTCCAGCTGAGCGATATCTCGTGGGAAGAGTTGGCCCAGCTACGCATCGATCGTACAGGTGCATTGTTCGGTATGGCTACCGTGATGTTCACCAGGACGTGGACTCATTTGAGTCTGAATTAGTCACGAAACTTGCAGACTTCATCCACTATGATTGGTTCAGAAAGCAAAGAGGCAACTCTTGCAGTGAGGATGATGCATCCCGTTCAAATGAATCGACAAGTGAGTGCAAGCTGGCTGTGATTGGAACCATAGCATTTGCAGGTGCAACTGCCTATGAAGAGACTGTGCAGCCTGCAAGCGTATCAGTTGGGTTCCAAACTGTTGACAGCATCGGTGATGTGATTGAAATGGAGCCACCAGGAGAAGAAAGAAGAGTCAGGTTTGCCATAGATGACGAATTTGAATGTGGCTCACGAGCTGAAACAGAAGCCCTTCTGCAAGAAGAACTAGAAGATCTTGTAGCTGCCCAGCAATCAGGGACAGCGTTCATTCTCGGGCATTCACACGTCCGGGCAAAGCAAGGATCGTCTCTGTTGAAGAGACTGGCCATTAACTATGGCTACAACTTCCTAAGAAGGAATTGCAGAGGAGCAGATGTTGCTCTTAAGGTGCCACCAGTTTCTCTTCTTGAAGTTGGCATGGTTTATGTTGTATAA 2562 44.69 MDVFNIHFQNTLSSIEEQPRRNFGHHCSSPCVCLCAFFSSLKNKGQTGNTDEGFSLGDRDKDAMDLEHGKCWDSSKKDSWKTVLVLAYQSLGVVYGDLSISPLYVYRSTFAEDIQHSDTNEEIYGVLSFVFWTLTIVPLFKYVFVVLRADDNGEGGTFALYSLICRHAKVSLLPNRQVADEALSTYLLEHPPEKKKQSKVKLLLEKHRALHTSLLILVLLGTCMVIGDGLLTPAISVFSAVSGLELSMSKAHHEYAVVPITCFILVCLFALQHYGTHRVGFVFAPIVLAWLLCISTLGIYNIIHWNPRVYQALSPYYMFKFLEKTRKSGWMSLGGILLCITGSEAMFADLGHFSYTAIQIAFTFLVYPALILAYMGQAAYLSQHHHTTKNIGFYVSVPESVRWPVLTIAILASVVGSQAIISGTFSIINQSQSLGCFPRVKVVHTSDKIHGQIYIPEINWILMILCVAVTIGFRDIKHLGNASGLAVMTVMLVTTCLTSLVIVLCWNKSPLLALSFLIFFGSVELLYFSASLTKFREGAWLPILLALFLMTIMFVWHYATIKKYEFDLHNKVSLEWLLALGPSLGIARVPGIGLVFTDLTSGIPANFSRFVTNLPAFHRILVFVCIKSVPVPFVPPAERYLVGRVGPATHRSYRCIVRYGYRDVHQDVDSFESELVTKLADFIHYDWFRKQRGNSCSEDDASRSNESTSECKLAVIGTIAFAGATAYEETVQPASVSVGFQTVDSIGDVIEMEPPGEERRVRFAIDDEFECGSRAETEALLQEELEDLVAAQQSGTAFILGHSHVRAKQGSSLLKRLAINYGYNFLRRNCRGADVALKVPPVSLLEVGMVYVV 853
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 6458224 6465509 - ClG42_07g0051300.10 Clacu07g0513 253111
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu07g0513 853 Pfam K+ potassium transporter C-terminal domain 590 851 IPR053952 -
Clacu07g0513 853 NCBIfam potassium uptake protein 86 852 IPR003855 GO:0015079(InterPro)|GO:0016020(InterPro)|GO:0071805(InterPro)
Clacu07g0513 853 Coils Coil 774 794 - -
Clacu07g0513 853 PANTHER OSMOTIC STRESS POTASSIUM TRANSPORTER 73 852 IPR003855 GO:0005886(PANTHER)|GO:0006813(PANTHER)|GO:0015079(InterPro)|GO:0015079(PANTHER)|GO:0016020(InterPro)|GO:0016020(PANTHER)|GO:0071805(InterPro)
Clacu07g0513 853 Pfam K+ potassium transporter integral membrane domain 86 578 IPR053951 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu07g0513 Clacu-Chr7:6458224 Clacu09g1930 Clacu-Chr9:34180129 1.10E-282 dispersed
Clacu07g0513 Clacu-Chr7:6458224 Clacu10g1431 Clacu-Chr10:27452568 3.60E-289 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu07g0513 K03549 - csv:101211022 1506.89