Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Clacu07g0524 | ATGGCTTTTTACTCACCATTTTCCTCTCTCTTCCTTCTTCCTTTCTTCTTCATCTATTTTCCCTTCGCTTTCGCCGACTACGGTGGCTGGCAGAGCGGCCACGCCACCTTTTATGGCGGTGGTGACGCATCTGGCACCATGGGTGGAGCTTGTGGGTATGGGAACTTGTATAGCCAAGGGTACGGCACAAACACGGTGGCGCTTAGCACAGCGCTATTCAACAACGGGCTAAGTTGTGGGGCTTGCTTCGAAATGACTTGTACAAATGATCCTAAATGGTGTCTTCCTGGAACCATTAGAGTCACTGCCACCAACTTCTGCCCTCCTAACTTTGCTCTCCCCAACAACAATGGCGGCTGGTGCAACCCTCCACTCCAACATTTCGACATGGCGGAACCTGCCTTTCTTCAGATTGCACAGTACCGTGCTGGAATCGTCCCTGTCTCCTTTCGTAGAGTACCATGTATGAAAAAAGGTGGAGTGAGGTTCACAATCAATGGTCACTCCTACTTCAACCTTGTTTTGATCACGAACGTGGGCGGCGCAGGTGATGTCCACGCTGTGTCCATAAAGGGGTCTCGAACAGGATGGCAAGCCATGTCTAGAAATTGGGGCCAAAATTGGCAAAGCAACAACTATCTCAACGGCCAAGGTCTTTCCTTTCAAGTCACTCTGAGTGATGGTCACACTCTCACTGCCTATAATCTCGTCCCTTCCAATTGGCAATTTGGCCAAACATTTGAAGGCCCTCAATTCTAA | 759 | 49.67 | MAFYSPFSSLFLLPFFFIYFPFAFADYGGWQSGHATFYGGGDASGTMGGACGYGNLYSQGYGTNTVALSTALFNNGLSCGACFEMTCTNDPKWCLPGTIRVTATNFCPPNFALPNNNGGWCNPPLQHFDMAEPAFLQIAQYRAGIVPVSFRRVPCMKKGGVRFTINGHSYFNLVLITNVGGAGDVHAVSIKGSRTGWQAMSRNWGQNWQSNNYLNGQGLSFQVTLSDGHTLTAYNLVPSNWQFGQTFEGPQF | 252 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 7 | 6700707 | 6703711 | - | ClG42_07g0052400.10 | Clacu07g0524 | 253122 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Clacu07g0524 | 252 | SUPERFAMILY | Barwin-like endoglucanases | 29 | 178 | IPR036908 | - | |
| Clacu07g0524 | 252 | Gene3D | - | 160 | 252 | IPR036749 | - | |
| Clacu07g0524 | 252 | CDD | DPBB_EXPA_N | 29 | 155 | - | - | |
| Clacu07g0524 | 252 | Pfam | Lytic transglycolase | 65 | 150 | IPR009009 | - | |
| Clacu07g0524 | 252 | ProSiteProfiles | Expansin, family-45 endoglucanase-like domain profile. | 48 | 160 | IPR007112 | - | |
| Clacu07g0524 | 252 | PANTHER | EXPANSIN-A15 | 22 | 252 | IPR002963 | GO:0009664(InterPro) | |
| Clacu07g0524 | 252 | FunFam | Expansin | 22 | 156 | - | - | |
| Clacu07g0524 | 252 | SMART | dpbb_1 | 65 | 150 | IPR007112 | - | |
| Clacu07g0524 | 252 | SUPERFAMILY | PHL pollen allergen | 157 | 249 | IPR036749 | - | |
| Clacu07g0524 | 252 | PRINTS | Expansin/Lol pI family signature | 69 | 87 | IPR007118 | GO:0005576(InterPro) | |
| Clacu07g0524 | 252 | PRINTS | Expansin/Lol pI family signature | 197 | 211 | IPR007118 | GO:0005576(InterPro) | |
| Clacu07g0524 | 252 | PRINTS | Expansin/Lol pI family signature | 235 | 249 | IPR007118 | GO:0005576(InterPro) | |
| Clacu07g0524 | 252 | PRINTS | Expansin/Lol pI family signature | 29 | 44 | IPR007118 | GO:0005576(InterPro) | |
| Clacu07g0524 | 252 | PRINTS | Expansin/Lol pI family signature | 47 | 65 | IPR007118 | GO:0005576(InterPro) | |
| Clacu07g0524 | 252 | PRINTS | Expansin/Lol pI family signature | 143 | 159 | IPR007118 | GO:0005576(InterPro) | |
| Clacu07g0524 | 252 | Pfam | Expansin C-terminal domain | 161 | 238 | IPR007117 | - | |
| Clacu07g0524 | 252 | FunFam | Expansin | 160 | 252 | - | - | |
| Clacu07g0524 | 252 | Gene3D | - | 22 | 156 | IPR036908 | - | |
| Clacu07g0524 | 252 | ProSiteProfiles | Expansin, Cellulose-binding-like domain profile. | 170 | 249 | IPR007117 | - | |
| Clacu07g0524 | 252 | PRINTS | Expansin signature | 118 | 135 | IPR002963 | GO:0009664(InterPro) | |
| Clacu07g0524 | 252 | PRINTS | Expansin signature | 235 | 251 | IPR002963 | GO:0009664(InterPro) | |
| Clacu07g0524 | 252 | PRINTS | Expansin signature | 99 | 109 | IPR002963 | GO:0009664(InterPro) | |
| Clacu07g0524 | 252 | PRINTS | Expansin signature | 87 | 98 | IPR002963 | GO:0009664(InterPro) | |
| Clacu07g0524 | 252 | PRINTS | Expansin signature | 206 | 227 | IPR002963 | GO:0009664(InterPro) | |
| Clacu07g0524 | 252 | PRINTS | Expansin signature | 135 | 148 | IPR002963 | GO:0009664(InterPro) | |
| Clacu07g0524 | 252 | PRINTS | Expansin signature | 60 | 74 | IPR002963 | GO:0009664(InterPro) | |
| Clacu07g0524 | 252 | PRINTS | Expansin signature | 159 | 171 | IPR002963 | GO:0009664(InterPro) | |
| Clacu07g0524 | 252 | PRINTS | Expansin signature | 171 | 192 | IPR002963 | GO:0009664(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Clacu01g0332 | Clacu-Chr1:3313546 | Clacu07g0524 | Clacu-Chr7:6700707 | 1.20E-15 | dispersed | |
| Clacu02g0329 | Clacu-Chr2:3013966 | Clacu07g0524 | Clacu-Chr7:6700707 | 5.70E-73 | dispersed | |
| Clacu02g2063 | Clacu-Chr2:33926913 | Clacu07g0524 | Clacu-Chr7:6700707 | 4.50E-102 | dispersed | |
| Clacu04g0861 | Clacu-Chr4:22946884 | Clacu07g0524 | Clacu-Chr7:6700707 | 5.20E-106 | dispersed | |
| Clacu04g1002 | Clacu-Chr4:24222524 | Clacu07g0524 | Clacu-Chr7:6700707 | 1.50E-77 | dispersed | |
| Clacu04g1275 | Clacu-Chr4:26817804 | Clacu07g0524 | Clacu-Chr7:6700707 | 5.50E-86 | dispersed | |
| Clacu05g2616 | Clacu-Chr5:33929896 | Clacu07g0524 | Clacu-Chr7:6700707 | 6.10E-111 | dispersed | |
| Clacu06g1720 | Clacu-Chr6:27843631 | Clacu07g0524 | Clacu-Chr7:6700707 | 1.90E-105 | dispersed | |
| Clacu07g0324 | Clacu-Chr7:3670316 | Clacu07g0524 | Clacu-Chr7:6700707 | 1.10E-87 | dispersed | |
| Clacu07g0524 | Clacu-Chr7:6700707 | Clacu08g1577 | Clacu-Chr8:25590918 | 1.40E-92 | dispersed | |
| Clacu01g0855 | Clacu-Chr1:9694199 | Clacu07g0524 | Clacu-Chr7:6700707 | 9.20E-74 | transposed | |
| Clacu10g0664 | Clacu-Chr10:9307417 | Clacu07g0524 | Clacu-Chr7:6700707 | 6.70E-68 | transposed | |
| Clacu11g0714 | Clacu-Chr11:7020692 | Clacu07g0524 | Clacu-Chr7:6700707 | 5.00E-112 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Clacu07g0524 | - | - | - | 0.0 |