Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu07g0525 ATGGAACTCCCCAATTCCACTAATCAAATGGCTTCCTCTTCCAACCCCACCACCCCATTTCGCGGTTCCTTCCACCGTCGAGCCCATTCCGAGGTCCATTTCCGGATTCCCGATGATCTCGATCTTGTCTCCGACCCTTTCGACGCCCCTTCTTCTGGATTTGGAGATCTGGGCTTCGAGGATGATCTCTTGTGCACTTTCATGGACATCGAGAAGATCGGATCCAAAATCGACAATGGGTCTTCGTCGAATCCTGAAGTGGCTGGCGGCGGTACTGCGGCGGAGAATGTTGAAGGGGAGAAAATCTCCCGCCCCAGGCACCGTCATAGCAATTCTGCTGATGGGTCTTCTATTATGGAGTCTATTGAGGCTAAGAAGGCCATGGATCCTGATAAGCTCGCTGAGTTGTGGACAATTGATCCTAAACGTGCCAAAAGGATTTTGGCAAATAGACAGTCTGCTGCTCGGTCAAAAGAGAGAAAAGCTCGCTACATAATGGAACTTGAGAGAAAAGTTCAAAGCCTTCAGACCGAAGCGACAACACTCTCTGCACAGCTCACGTTGTACCAGAGAGATACCACGGGGCTTTCAACAGAAAACTCAGAGCTCAAACTTCGTTTACAAGCTATGGAACAGCAAGCTCATCTTCGCGATGCTCTAAATGAAGCTTTGAAAAAGGAAGTCGAGCGGCTCAAGATCGCAACTGGAGAAGTAATGACAGCTACAGATTCGTATAACTTTGGAATGTCGCAAGTTTCATATCCCCAATCTTGCTTCTCACACCAACCACAACCTGAGCGACACAACCCACAGAGGACGACGCAAGGGCCCCAAGTTCATCCATTCCATTCTAGTTTACCAAACCCACATCAGTCTTTGTTTGTTGCATCGCATCAGCCTCACGCCTTGACAGAAATGTTTCATCAAGATCCTATTAGCCGATTGCAGGGTCTCGACATCAGTAGCAGAGGCACAGAAATAAAGCCAGAAGGCTCCTCTATATCCGTAGGTGGGGCTAAGGAAATTACTAAATTGTCCACAGTTGAAGGGTTATTGGGGTCCCTCATGGGACTGCCATTAAAGGCCACATGGTAG 1095 48.49 MELPNSTNQMASSSNPTTPFRGSFHRRAHSEVHFRIPDDLDLVSDPFDAPSSGFGDLGFEDDLLCTFMDIEKIGSKIDNGSSSNPEVAGGGTAAENVEGEKISRPRHRHSNSADGSSIMESIEAKKAMDPDKLAELWTIDPKRAKRILANRQSAARSKERKARYIMELERKVQSLQTEATTLSAQLTLYQRDTTGLSTENSELKLRLQAMEQQAHLRDALNEALKKEVERLKIATGEVMTATDSYNFGMSQVSYPQSCFSHQPQPERHNPQRTTQGPQVHPFHSSLPNPHQSLFVASHQPHALTEMFHQDPISRLQGLDISSRGTEIKPEGSSISVGGAKEITKLSTVEGLLGSLMGLPLKATW 364
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 6715184 6721423 - ClG42_07g0052500.10 Clacu07g0525 253123
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu07g0525 364 MobiDBLite consensus disorder prediction 1 21 - -
Clacu07g0525 364 Coils Coil 158 185 - -
Clacu07g0525 364 SUPERFAMILY Leucine zipper domain 142 193 IPR046347 GO:0003700(InterPro)|GO:0006355(InterPro)
Clacu07g0525 364 FunFam probable transcription factor PosF21 141 194 - -
Clacu07g0525 364 MobiDBLite consensus disorder prediction 99 113 - -
Clacu07g0525 364 MobiDBLite consensus disorder prediction 257 279 - -
Clacu07g0525 364 Coils Coil 217 237 - -
Clacu07g0525 364 Gene3D - 141 194 - -
Clacu07g0525 364 CDD bZIP_plant_RF2 143 192 IPR044759 GO:0003700(InterPro)|GO:0006355(InterPro)
Clacu07g0525 364 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 140 203 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Clacu07g0525 364 MobiDBLite consensus disorder prediction 78 115 - -
Clacu07g0525 364 SMART brlzneu 138 202 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Clacu07g0525 364 MobiDBLite consensus disorder prediction 1 23 - -
Clacu07g0525 364 PANTHER TRANSCRIPTION FACTOR POSF21-RELATED 11 289 - GO:0003700(PANTHER)|GO:0005634(PANTHER)
Clacu07g0525 364 Pfam bZIP transcription factor 142 196 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu02g1951 Clacu-Chr2:33071551 Clacu07g0525 Clacu-Chr7:6715184 5.60E-72 dispersed
Clacu05g0838 Clacu-Chr5:7236615 Clacu07g0525 Clacu-Chr7:6715184 2.90E-50 dispersed
Clacu05g0841 Clacu-Chr5:7273579 Clacu07g0525 Clacu-Chr7:6715184 4.20E-41 dispersed
Clacu07g0525 Clacu-Chr7:6715184 Clacu08g0841 Clacu-Chr8:18442680 2.50E-50 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
48006 PF00170 bZIP_1 1.80E-08 CL0018 Clacu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu07g0525 - - - 0.0