Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu07g0529 ATGGCCAAGAAAATGATTGCAGTGTTTTTGATGTTCATTGTGGTGGTAGCTGCTTTGCAGTTTGCCACTGCCAATGAGGATGAGGTGACCAAATATGAGGCCAAATTTGATGCCAAATACAAGTCTTGTTATGAAACTTGCGAGAAGGAATGCCTTGAAAATGGCAATGGCCAAAGCTTCTGTGAAGTTAAATGTGATGAAGATTGTGATGAAAAAGAAACTGCTGATTTCAAGTCAATTTTTGGCTATAACACACAGCCATCTGACCAAACCCAGAACACCCCTCTTCTCTTCACAACCTTACTCTCTCTCAAATTCTCCAATTCCCAATTTCCTTCATCTTCCCCTTTTCCGTTTTCACCAATTCCCACCTTCCTTCTCTCTCAAAACCCACCATGGCCGATTCCCGATAACACTCAATTTCCAATTCCATTCCAACCCCCAACACACACACACACACACACAATGTCCTCCGAAGACATCAATGGCCTCAACTCCCAGCTCGTCTTCCAAGACGAAGCCCTCCCCTTCAATTGCTCCACCACGCCGCAGCGTCGCGTCCCCGACCCAGGTCCCAAAACCCGCGAACTCTGCGGTTTCATGGACGACAAGCTCTTCCCTGGCGTGGACCGAGACCGATTCTTTTCCCACCAGGGTGAAGATTTCCGCCGCAGTGTTTTCGGTCACACCCGGAATTGGAATGGGAATGGGACTGCGAGAACTGGAAGTGGGAAAGGGTCGGATGAGGATGATGATGATGACGACGATGATGAAGATGAAGTCGATGATGGTGATGATGATGTTGAGGGGCTTGTTTCTTTGGATGATGTCAATAAGTGTACTAAAACTTCTATCCCCAACGATAGCAACAATGATAGAAGCGATCAGAGTAGTGAGGGCTTGAAGAATGGGACCAACAAATTGGGAAATGGGAAGCTTAAGCACCATTCTTCTTTTGGTGGAACTCTGTTAGTCAAGGATGGTTTAGTTGGCTCTTCAGGCAACAACACAGGAGCAACTCAGAGTGAGAACCATCCGCAGGGAAGGTTGGGGAACTACCCAAATGCTGTTACAATTGCAGAACCTGAAAGTGATGCTTATTATTCCCAGTATTTGCAAAGCACTGAAGTGTCTGCTTCTGGGCAGAAGGATTTGGGTATGGAAAATGGATGTGGTTTTGGGAGAAGGGATGTGTCGTTTTCAGGAGAGCCTGGAGAGTCTTTGAGAGCAATTCTCACTGACCCTGTGACGGGCGCTCTCATGGACGATGCAATGATATTGCCGTGTGGACATTCCTTTGGGAGTGGTGGAATACAACATGTTCTTAGAGTAAAATCTTGTTACTCATGCTCTCAGTCAGTTTCTGAAGACTCTATTGCTCAAAACTTATCTCTTCAAGCTGCAGTCCAAGCATTCCGCCGGGAAGAAGAATTAATATTTTACCGCTCACCGAAAAGGAGAAGGGAGAGGTTTGAGCAGGACAAGGGTGGTTATGGTGATTTGACTCTCATGGATACCACAAGAGGTCGAGGTGTTCAGTTTCCTTTCGCAGTGACTGATAGGGTAATTATCAAGGGGAACAAGAGGACACCGCAACGTTTTGTGGGACGTGAGGCTGTTGTTACAACACAGTGCTTGAATGGATGGTATGTGGTGAAAACACTAGACAATGCAGAGAGTGTAAAGTTGCAGTACCGCTCACTTGCGAAGGTTCCAAATGATGCAACATCAAAGACGATAACAAGGAAGATCACACCAAATTGGCTTTAG 1770 46.21 MAKKMIAVFLMFIVVVAALQFATANEDEVTKYEAKFDAKYKSCYETCEKECLENGNGQSFCEVKCDEDCDEKETADFKSIFGYNTQPSDQTQNTPLLFTTLLSLKFSNSQFPSSSPFPFSPIPTFLLSQNPPWPIPDNTQFPIPFQPPTHTHTHTMSSEDINGLNSQLVFQDEALPFNCSTTPQRRVPDPGPKTRELCGFMDDKLFPGVDRDRFFSHQGEDFRRSVFGHTRNWNGNGTARTGSGKGSDEDDDDDDDDEDEVDDGDDDVEGLVSLDDVNKCTKTSIPNDSNNDRSDQSSEGLKNGTNKLGNGKLKHHSSFGGTLLVKDGLVGSSGNNTGATQSENHPQGRLGNYPNAVTIAEPESDAYYSQYLQSTEVSASGQKDLGMENGCGFGRRDVSFSGEPGESLRAILTDPVTGALMDDAMILPCGHSFGSGGIQHVLRVKSCYSCSQSVSEDSIAQNLSLQAAVQAFRREEELIFYRSPKRRRERFEQDKGGYGDLTLMDTTRGRGVQFPFAVTDRVIIKGNKRTPQRFVGREAVVTTQCLNGWYVVKTLDNAESVKLQYRSLAKVPNDATSKTITRKITPNWL 589
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 6808997 6817653 - ClG42_07g0052900.10 Clacu07g0529 253127
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu07g0529 589 MobiDBLite consensus disorder prediction 227 314 - -
Clacu07g0529 589 ProSiteProfiles U-box domain profile. 407 479 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Clacu07g0529 589 Pfam Pollen allergen Ole e 6 43 74 IPR015333 -
Clacu07g0529 589 MobiDBLite consensus disorder prediction 330 354 - -
Clacu07g0529 589 MobiDBLite consensus disorder prediction 248 271 - -
Clacu07g0529 589 MobiDBLite consensus disorder prediction 229 243 - -
Clacu07g0529 589 SUPERFAMILY RING/U-box 407 479 - -
Clacu07g0529 589 SUPERFAMILY Pollen allergen ole e 6 37 73 IPR036466 -
Clacu07g0529 589 MobiDBLite consensus disorder prediction 277 305 - -
Clacu07g0529 589 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 406 478 IPR013083 -
Clacu07g0529 589 Gene3D Pollen allergen ole e 6 37 80 IPR036466 -
Clacu07g0529 589 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 62-RELATED 164 580 - -
Clacu07g0529 589 MobiDBLite consensus disorder prediction 330 351 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu06g0238 Clacu-Chr6:2755751 Clacu07g0529 Clacu-Chr7:6808997 6.00E-19 dispersed
Clacu06g0239 Clacu-Chr6:2761657 Clacu07g0529 Clacu-Chr7:6808997 1.30E-16 dispersed
Clacu07g0529 Clacu-Chr7:6808997 Clacu11g0264 Clacu-Chr11:2387465 5.80E-36 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu07g0529 - - - 0.0