Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu07g0530 ATGCGAGCATTGTTGAAGATGAAACGGCTGATTGAGCTCATCTTCTTGTTCGTTTTGACTCCACTTTGTGCTCGATGTGTAAACCTATCTTTAAACGACGACGTTTTGGGCCTGATAGTGTTTAAAGCTGCTGTTCAAGATCCGAAGCTGAAGCTCGCGAGCTGGAACGAAGATGACGATAGTCCCTGCAATTGGACTGGTGTTCAATGCAGCCCCAGATCCAACCGGGTCATCGAGCTCAACCTCGATGGGTTTTCTCTCTCGGGTCGGCTCGGCCGCGGACTTTTCCAGTTGGAGTTTCTGCAGAGATTGTCGCTCTCGAAGAACAATCTTAGTGGGAATATAAGCCCTAATTTCGCTCGAGTCGACAATCTTCAGGTGATTGATTTGAGTGGGAATAATTTCTCTGGTACTGTTCCGGATGATTTTTTTCGTCAATGTAGGTCATTGAGAGTCATCTCTTTGGCCAACAACAAATTTTCTGGGGAAATTCCTGATAGTTTGAGCTTGTGCGGGAGTCTTATTGCAGTTAACTTTTCCTCAAATCAGTTTTCGGGTTCTTTGCCTTCTGGGATTTGGTCTTTCAGTGGACTTCGATCTTTGGACTTGTCTGATAATGCTCTAGTGGGTGAAATTCCGAAAGTAAGTGAGAAGTTGTATAATCTGCGGACTCTTAACTTGAGCAAGAATCGGTTTTCTGGACAGATTCCTGATGGTATTGGGAGCTGTTTGCTTCTGAGGTCCATTGATCTTAGCGATAATTCATTCTCTGGGACTCTTCCTCAGACCATGCAGAAACTTGTTTTGTGTGTTGATCTGATTTTAAGCAGGAATTTGTTTGAAGGAGATGTTCCAGAGTGGATAGGAGAAATGAAAAACCTTGAAACTCTGGACTTTTCAGGGAACAATTTTACTGGCCGTATACCAACTACAATGGAGAATCTTCAATATCTAAAAGTATTAAATCTCTCTTCAAATGGCTTTACTGATAGCTTTCCAGAATCTGTGTTGAAGTGCCAAAGCCTTTTGGCATTAGATTTCAGCCATAACTTGATCACGGGTAATCTTCCCGCGATCGGAAGTTTAGGCAAGCTGCAGTTTCTGAACCTGTCTGGGAATTCTTTTGTTGGTCCTATTCCAGAAACTATTGGAGATTTGAAAGCTTTAAGCATTCTTGACTTGAGTGGAAATCAGCTGAATGAAACCATTCCTGATGCAATTGGAGGAGCTGCGTCCCTAATTGAGCTGAAGCTGGATGGAAATTTTCTAGGCGGTGAAATTCCCTCTTCAATTGGTCACTGTTCTTCCCTTTCAGCTCTGTTCATATCACACAATAACTTAACTGGTCCGATACCAGCAGCACTATCTAAACTCTCTTATCTTCAAAATGTCGATTTATCTTTCAACAATCTCAATGGAACCCTTCCGAAGCAGTTGTCTAATCTTCCAAACCTTCTTGTGTTCAATATATCTCACAACAACCTCAACGGTGAGCTGCCTGGTGGTGGATTCTTTAACACCATCTCCCCTTCATCTGTTGCTAGCAATCCATCCCTTTGTGGCGCTGTTGTTAATAAGTCTTGCCCTTCTGTCCTTCCAAAACCTATCGTTCTTAATCCCAACTCCACTTCAGATTCCATTTCCAGCTCACTGCCTCCAAGTAATAATCACAGAAGAAATAGAAATATCCTCAGCATTTCTGCGCTGGTTGCCATTGGTGCCGCGGCTTTCATAATCATTGGTGTTATATCGATCACCATCCTGAACCTTCGCGTTCAATCACCCACATCTTCTTTGTCCGCAGCTGCACTCGCATTATCTGTAGGGGATGATTTCAGTAATTCCTCCAGTCCTGATGCGAATTCTGGAAAGCTTGTGGTGTTATCAGGAGAACTTGACTTTAGCACAGGAGCACATGCCCTGCTGAACAAGGATTGTGAACTTGGGCGTGGTGGATTTGGAGCAGTTTACCATACTATTCTGCGGGACGGACACTCCGTTGCAATCAAGAAGCTTACAGTTTCTAGCCTTGTCAAGTCCCAAGAGGATTTCGAGAGGGAAGTTAGGAAGTTCGGGATTGTCAGGCACCAAAATCTCGTTGCACTCGAAGGTTATTATTGGACTCCCTCACTACAGCTCCTTATTTACGAATTTGTCCCCGGAGGTAGCTTGTATAGGTTGCTCCATGAAGCATCAGATGACAGTGTTCTTTCATGGAATGAGAGATTCGACATAATTCTTGGGACAGCAAAAGGTCTTGCTCACTTACATCAATCAAACACAATCCACTATAACATAAAATCCAGCAACATTCTTATTGATTGTAATGGTCAACCGAAGGTGGGAGATTATGGGCTAGCTAGATTACTGCCAATGTTAGACCGTTATGTTTTAAGTAGCAAGATCCAGAGCGCACTTGGTTACATGGCACCAGAGTTTGCTTGCAGGACGGTAAAGATAACCGAAAAATGCGATGTGTATGGTTTTGGGATATTGATTCTAGAGGTGGTTACGGGGAAGAGACCTGTCGAGTACATGGAAGATGACGTTGCAGTCCTCTGTGACATGGTCCGAGAAGCAGTGGAAGAAGGAAGAGCGGAAGAATGCATTGACAGGAAACTGAGGGGGTATTTCCCTGTCGAAGAGGCTGTTCCCGTGTTAAAATTAGGGTTGATATGCACCTCCCATGTGCCATCAAACCGACCCGACATGAGAGAAATGGTCAAGATATTGGAGATGATCAAATGCCCAGCTGAATTACAAGAGGAATTGGGATAA 2778 43.77 MRALLKMKRLIELIFLFVLTPLCARCVNLSLNDDVLGLIVFKAAVQDPKLKLASWNEDDDSPCNWTGVQCSPRSNRVIELNLDGFSLSGRLGRGLFQLEFLQRLSLSKNNLSGNISPNFARVDNLQVIDLSGNNFSGTVPDDFFRQCRSLRVISLANNKFSGEIPDSLSLCGSLIAVNFSSNQFSGSLPSGIWSFSGLRSLDLSDNALVGEIPKVSEKLYNLRTLNLSKNRFSGQIPDGIGSCLLLRSIDLSDNSFSGTLPQTMQKLVLCVDLILSRNLFEGDVPEWIGEMKNLETLDFSGNNFTGRIPTTMENLQYLKVLNLSSNGFTDSFPESVLKCQSLLALDFSHNLITGNLPAIGSLGKLQFLNLSGNSFVGPIPETIGDLKALSILDLSGNQLNETIPDAIGGAASLIELKLDGNFLGGEIPSSIGHCSSLSALFISHNNLTGPIPAALSKLSYLQNVDLSFNNLNGTLPKQLSNLPNLLVFNISHNNLNGELPGGGFFNTISPSSVASNPSLCGAVVNKSCPSVLPKPIVLNPNSTSDSISSSLPPSNNHRRNRNILSISALVAIGAAAFIIIGVISITILNLRVQSPTSSLSAAALALSVGDDFSNSSSPDANSGKLVVLSGELDFSTGAHALLNKDCELGRGGFGAVYHTILRDGHSVAIKKLTVSSLVKSQEDFEREVRKFGIVRHQNLVALEGYYWTPSLQLLIYEFVPGGSLYRLLHEASDDSVLSWNERFDIILGTAKGLAHLHQSNTIHYNIKSSNILIDCNGQPKVGDYGLARLLPMLDRYVLSSKIQSALGYMAPEFACRTVKITEKCDVYGFGILILEVVTGKRPVEYMEDDVAVLCDMVREAVEEGRAEECIDRKLRGYFPVEEAVPVLKLGLICTSHVPSNRPDMREMVKILEMIKCPAELQEELG 925
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 6831943 6835124 - ClG42_07g0053000.10 Clacu07g0530 253128
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu07g0530 925 Pfam Protein tyrosine and serine/threonine kinase 644 910 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Clacu07g0530 925 Gene3D Ribonuclease Inhibitor 32 313 IPR032675 -
Clacu07g0530 925 SMART LRR_typ_2 386 410 IPR003591 -
Clacu07g0530 925 SMART LRR_typ_2 98 121 IPR003591 -
Clacu07g0530 925 SMART LRR_typ_2 291 315 IPR003591 -
Clacu07g0530 925 SMART LRR_typ_2 482 506 IPR003591 -
Clacu07g0530 925 SMART LRR_typ_2 122 146 IPR003591 -
Clacu07g0530 925 SMART LRR_typ_2 219 243 IPR003591 -
Clacu07g0530 925 SUPERFAMILY L domain-like 195 544 - -
Clacu07g0530 925 FunFam Leucine-rich repeat receptor-like protein kinase PXC2 357 531 - -
Clacu07g0530 925 SUPERFAMILY Protein kinase-like (PK-like) 646 912 IPR011009 -
Clacu07g0530 925 ProSitePatterns Protein kinases ATP-binding region signature. 648 671 IPR017441 GO:0005524(InterPro)
Clacu07g0530 925 FunFam Putative LRR receptor-like serine/threonine-protein kinase IRK 32 310 - -
Clacu07g0530 925 Pfam Leucine rich repeat N-terminal domain 31 71 IPR013210 -
Clacu07g0530 925 Gene3D Transferase(Phosphotransferase) domain 1 719 923 - -
Clacu07g0530 925 Gene3D Phosphorylase Kinase; domain 1 631 718 - -
Clacu07g0530 925 Gene3D Ribonuclease Inhibitor 314 532 IPR032675 -
Clacu07g0530 925 ProSiteProfiles Protein kinase domain profile. 642 914 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu07g0530 925 SUPERFAMILY L domain-like 32 266 - -
Clacu07g0530 925 Pfam Leucine rich repeat 197 255 IPR001611 GO:0005515(InterPro)
Clacu07g0530 925 Pfam Leucine rich repeat 317 374 IPR001611 GO:0005515(InterPro)
Clacu07g0530 925 CDD STKc_IRAK 648 912 - -
Clacu07g0530 925 FunFam probable LRR receptor-like serine/threonine-protein kinase IRK 636 718 - -
Clacu07g0530 925 FunFam probable LRR receptor-like serine/threonine-protein kinase IRK 719 920 - -
Clacu07g0530 925 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 98 916 IPR050647 -
Clacu07g0530 925 Pfam Leucine Rich Repeat 461 482 IPR001611 GO:0005515(InterPro)
Clacu07g0530 925 Pfam Leucine Rich Repeat 436 458 IPR001611 GO:0005515(InterPro)
Clacu07g0530 925 Pfam Leucine Rich Repeat 149 169 IPR001611 GO:0005515(InterPro)
Clacu07g0530 925 Pfam Leucine Rich Repeat 389 409 IPR001611 GO:0005515(InterPro)
Clacu07g0530 925 Pfam Leucine Rich Repeat 412 434 IPR001611 GO:0005515(InterPro)
Clacu07g0530 925 Pfam Leucine Rich Repeat 124 143 IPR001611 GO:0005515(InterPro)
Clacu07g0530 925 Pfam Leucine Rich Repeat 101 120 IPR001611 GO:0005515(InterPro)
Clacu07g0530 925 Pfam Leucine Rich Repeat 293 315 IPR001611 GO:0005515(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu07g0530 Clacu-Chr7:6831943 Clacu10g2240 Clacu-Chr10:35341536 1.20E-165 dispersed
Clacu11g0710 Clacu-Chr11:6968293 Clacu07g0530 Clacu-Chr7:6831943 5.10E-199 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
73685 PF07714 PK_Tyr_Ser-Thr 4.20E-40 CL0016 Clacu PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu07g0530 - - - 0.0