Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu07g0533 ATGGAGGCTCCTTCTTCTTCTTCTTCAATCAAATGGAGCTCTGAAAATGAAAATGGATCTCAACCTCATGTTCTTGCTGTTGATGATAATCTTGTTGATCGTAAACTTGTTGAGAAATTACTCAAAAACTCCTCTTGTAAAGTAACGACGGCAGAAAATGGTGTTAGTGCTTTGGAGTTCTTAGGTTTGTTGGATGAACATAATCAACACAGCAACTTAGAATGCTCCAATAGGTCAAAGGTGAACATGATCATCACAGATTATTGCATGCCAGGAATGTCTGGATATGAACTTCTCAAGAAAATCAAGAGATCTTCGATGATGAAGGAAGTTCCTGTGGTGGTTGTATCATCGGAAAACGTGCCCACTCGCATCAACAAGTGTTTGAAAGAAGGAGCAGAGATGTTCATGCTGAAACCTTTGAAACAATCTGATGTGGTGAAACTCAAGTGCCAGTTGATGAACTGA 468 39.53 MEAPSSSSSIKWSSENENGSQPHVLAVDDNLVDRKLVEKLLKNSSCKVTTAENGVSALEFLGLLDEHNQHSNLECSNRSKVNMIITDYCMPGMSGYELLKKIKRSSMMKEVPVVVVSSENVPTRINKCLKEGAEMFMLKPLKQSDVVKLKCQLMN 155
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 6887029 6889109 + ClG42_07g0053300.10 Clacu07g0533 253131
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu07g0533 155 Pfam Response regulator receiver domain 24 148 IPR001789 GO:0000160(InterPro)
Clacu07g0533 155 PANTHER TWO-COMPONENT RESPONSE REGULATOR 18 150 IPR045279 GO:0009736(InterPro)
Clacu07g0533 155 ProSiteProfiles Response regulatory domain profile. 23 154 IPR001789 GO:0000160(InterPro)
Clacu07g0533 155 SMART REC_2 22 150 IPR001789 GO:0000160(InterPro)
Clacu07g0533 155 MobiDBLite consensus disorder prediction 1 23 - -
Clacu07g0533 155 Gene3D - 18 155 - -
Clacu07g0533 155 SUPERFAMILY CheY-like 20 149 IPR011006 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu07g0533 Clacu-Chr7:6887029 Clacu10g1595 Clacu-Chr10:29270778 1.70E-40 dispersed
Clacu07g0533 Clacu-Chr7:6887029 Clacu06g1772 Clacu-Chr6:28263442 1.90E-39 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
48007 PF00072 Response_reg 1.10E-21 CL0304 Clacu TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu07g0533 K14492 - csv:101208898 248.44