Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu07g0546 ATGGAGACCTCGCCTTCCAATTCCGATCCTTACTCCAATTCTTCTTCACCCACAACTGCTCGTACCTCCTCCAGATTTGGCCTCTCGCTCCCTTCCCTCAATTTCTTCCGTTCGCCTTTGTCTGTCATCTTGGATTACTCTGGAATTCTTCCCACTAGGGCTGTTCGTCATGAATCCGACCCTGTAATCAACGCCGCTGCCACGCCTGATTTGCGGGTTTATTCTCAAAATCAGAATCACTTGATCACCACTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTGCCACAACCTCTTCTGGTAATACTATCCCCTCTGGGGAGGTTTCCATAAGGATTATTGGGTCTGGTGAGCAAGATCCTTCTCCCAGTGGCTTGTTGCCAAATCAGGCTGGTTATGAGCAAAATGGCAGACTTCCTGTTTCTGGGGATCAGCCGGAATCCCCTGATGAGGAACGAGTTCCTTTGGTGTCAACTGCTTCTTCATCTATTCAATCTGGAAGCACTCGTGTCGATGGAGAATCTGGAAATGGAATGGAAGAGAGTGTCAATAGAGATTCGTCTTACCAGAGATATGATATTCAGCAGGTTGCCAGATGGATTGAACAGATTCTTCCGTTCTCTTTGCTATTGCTGATAGTCTTTATCCGTCAGCACTTAGAAGGTTTTTTCATCACAATTTGGATATCAGCTGTTATGTATAAGTCGAACGACATTGTCAAGAAACAGACTGCTCTAAAGGGAGAGAGGAAAATTTCTGTCCTTGCTGGAACTTCTATTGCATTTTTGGTTCATGTAATTGGGATTTACTGGTGGTGTCATAGTGACGATCTTCTATACCCCTTAGTCATGCTTCCACCAAAGACAGTACCACCTTTTTGGCATGCCTTGTTCATCATTTTGGTTAACGATACGATGGTGAGGCAGTTTGCTATGGCTCTCAAATGTTTTCTTCTTATTTACTACAAGAATGGCAGAGGCCATAATTTTCGTCGGCAGGGTCAAATCTTAACTCTTGTGGAATACACTCTTCTATTGTACCGTGCATTATTACCAACACCTGTATGGTACAGATTCTTCTTGAATAAAGATCAAGGGAGCCTCTTTTCATCGCTAACAACAGGATTATATTTAACTTTCAAGCTAACGTCTGTTGTTGAGAAGATTCAATCATTTGTTGCTGCATTTAAGGCTCTATCACGAAAAGAAGTCCATTATGGATCATATGCCACATCAGAACAGGTAAATGCTGCGGGAGACCTCTGTGCCATTTGCCAGGAGAAGATGAATGCTCCAATCCTATTACGTTGTAAGCACATCTTCTGTGAAGATTGTGTTTCTGAATGGTTTGAAAGAGAGAGAACTTGCCCTCTTTGCCGGGCACTGGTAAAGCCTGCAGAACTCCGAACATTTGGCGATGGATCAACCAGCTTACTCTTCCAGTTGTTTTAG 1452 43.39 METSPSNSDPYSNSSSPTTARTSSRFGLSLPSLNFFRSPLSVILDYSGILPTRAVRHESDPVINAAATPDLRVYSQNQNHLITTSSSSSSSSSSSATTSSGNTIPSGEVSIRIIGSGEQDPSPSGLLPNQAGYEQNGRLPVSGDQPESPDEERVPLVSTASSSIQSGSTRVDGESGNGMEESVNRDSSYQRYDIQQVARWIEQILPFSLLLLIVFIRQHLEGFFITIWISAVMYKSNDIVKKQTALKGERKISVLAGTSIAFLVHVIGIYWWCHSDDLLYPLVMLPPKTVPPFWHALFIILVNDTMVRQFAMALKCFLLIYYKNGRGHNFRRQGQILTLVEYTLLLYRALLPTPVWYRFFLNKDQGSLFSSLTTGLYLTFKLTSVVEKIQSFVAAFKALSRKEVHYGSYATSEQVNAAGDLCAICQEKMNAPILLRCKHIFCEDCVSEWFERERTCPLCRALVKPAELRTFGDGSTSLLFQLF 483
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 7177438 7185237 - ClG42_07g0054600.10 Clacu07g0546 253144
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu07g0546 483 ProSiteProfiles Zinc finger RING-type profile. 422 460 IPR001841 -
Clacu07g0546 483 SUPERFAMILY RING/U-box 415 465 - -
Clacu07g0546 483 MobiDBLite consensus disorder prediction 155 184 - -
Clacu07g0546 483 Pfam Ring finger domain 421 460 IPR001841 -
Clacu07g0546 483 MobiDBLite consensus disorder prediction 82 184 - -
Clacu07g0546 483 MobiDBLite consensus disorder prediction 82 109 - -
Clacu07g0546 483 SMART ring_2 422 459 IPR001841 -
Clacu07g0546 483 ProSitePatterns Zinc finger RING-type signature. 437 446 IPR017907 -
Clacu07g0546 483 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 396 469 IPR013083 -
Clacu07g0546 483 CDD RING-HC_RNFT1-like 420 460 - -
Clacu07g0546 483 PANTHER UNCHARACTERIZED RING FINGER-CONTAINING PROTEIN 13 483 IPR044235 GO:0061630(PANTHER)|GO:0061630(InterPro)|GO:1904294(InterPro)
Clacu07g0546 483 MobiDBLite consensus disorder prediction 1 24 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu04g0666 Clacu-Chr4:20550057 Clacu07g0546 Clacu-Chr7:7177438 4.60E-154 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu07g0546 - - - 0.0