Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu07g0599 ATGGCTACGCTTCAGACATGGAGGAAAGCCTATGGCGCTCTCAAGGATTCTACCAAAGTCGGCCTTGCCCATGTCAACAGCGATTACGCGGATTTGGATGTCGCAATAGTCAAAGCTACTAACCACGTCGAGTGCCCGCCCAAGGAGAGACACCTCAGGAAAATTCTGATTGCTACATCTGCAATTAGACCTCGTGCTGATGTTGCTTATTGCATTCATGCCCTTGCTCGTCGCTTGTCCAAGACTCGGAATTGGACGGTAGCTTTGAAAACATTAATAGTCATACATAGGACCTTGAGGGAGGGCGATCCAACATTCAGGGAGGAACTTTTGAATTTTACACAAAGAGCTCGAATTCTTCAACTGTCTAATTTTAAGGATGATTCAAGCCCAATTGCTTGGGATTGCTCTGCATGGGTACGTACATATGCATTGTTTTTAGAGGAGCGTCTCGAATGTTTCAGGATACTTAAGTATGACATTGAATCTGAACGCCTGCCAAGACCTGCCCAAGGTCAGGATAAGGGATACAGCAGAACCAGGGAACTGGACTGTGAAGAACTGTTGGAACATTTGCCTGCTTTGCAACAGCTGTTGTATCGTCTTATTGGCTGCAGGCCAGAAGGAGCAGCTATTGGGAATTATGTTATACAGTACGCCCTGGCACTGGTATTGAAAGAGAGCTTTAAAATCTATTGTGCTATTAACGATGGAATTATAAATCTCGTTGACAAGTTTTTTGAGATGCCAAGACATGATGCTATCAAAGCCCTTGATATCTATAAAAGAGCTGGCCAACAGGCTGGAAGCCTATCAGATTTCTATGATATTTGCAAAGGGTTAGAACTTGCTCGGAATTTCCAGTTTCCTGTTTTAAGAGAGCCTCCACAGTCATTCCTTAATACGATGGAAGAGTATATTAGGGAGGCACCACGAATGGTTACAGTACCAAATGAACCACTGCTGCAACTTACCTACAAGCCAGAAGAATCTCTTTCCGAGGATCAAAACTTACCCACTGATCAGCCGGAGGCTTCTCCTTCAGATGATCTTTCTATTACTCCTGTTGAAACGGCTCCACCACCACCTCCAGCACCAGCTCCTGCTCCTGAAAGCCATGCAGAGACTGGAGATTTATTGGGATTGAGTCTTGCTACCACTGAAGTATCTGAAATTGAGGAGAGAAATGCTTTGGCTTTAGCTATAGTTCCTTCTGGTGATACAGCAACACCCACTTTTCATTCCAATGGTGCACATACAAATGATTTCGATCCTACTGGTTGGGAGCTTGCCTTGGTCACCACTCCAAGTAGTAACCTTTCATCAACTAATGAGAGACAACTGGCTGGTGGATTGGACACACTTACTCTCGATAGCTTATATGATGAAGGTGCATATAGAGCTTCTCTACAGCCCGTGTACGGTAAGCCCGCACCAAATCCGTTTGAGGTGCAAGATCCGTTTGCATATTCGAACGCCATTGCTCCACCTCCATCAGTTCAAATGGCACCACTACCTCAGCAGCAGGCCAATCCTTTTGGTCCTTTTCAACCTACCTTCCCACAGCAGCAACAGCCCTTTTCAATGGACCCAACAAATCCTTTTGGTGATGCAGGTTTTGGAGCATTCCCTGCTCCTAACCACCATACTGTACCACCGCCTGCAAGCAACCCGTTCGGAAGCACAGGCCTGCTGTAG 1698 45.88 MATLQTWRKAYGALKDSTKVGLAHVNSDYADLDVAIVKATNHVECPPKERHLRKILIATSAIRPRADVAYCIHALARRLSKTRNWTVALKTLIVIHRTLREGDPTFREELLNFTQRARILQLSNFKDDSSPIAWDCSAWVRTYALFLEERLECFRILKYDIESERLPRPAQGQDKGYSRTRELDCEELLEHLPALQQLLYRLIGCRPEGAAIGNYVIQYALALVLKESFKIYCAINDGIINLVDKFFEMPRHDAIKALDIYKRAGQQAGSLSDFYDICKGLELARNFQFPVLREPPQSFLNTMEEYIREAPRMVTVPNEPLLQLTYKPEESLSEDQNLPTDQPEASPSDDLSITPVETAPPPPPAPAPAPESHAETGDLLGLSLATTEVSEIEERNALALAIVPSGDTATPTFHSNGAHTNDFDPTGWELALVTTPSSNLSSTNERQLAGGLDTLTLDSLYDEGAYRASLQPVYGKPAPNPFEVQDPFAYSNAIAPPPSVQMAPLPQQQANPFGPFQPTFPQQQQPFSMDPTNPFGDAGFGAFPAPNHHTVPPPASNPFGSTGLL 565
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 9397120 9423484 + ClG42_07g0059900.10 Clacu07g0599 253197

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Clacu07g0599 565 Gene3D ANTH domain 173 323 IPR014712 GO:0005545(InterPro)|GO:0030136(InterPro)|GO:0030276(InterPro)|GO:0048268(InterPro)
Clacu07g0599 565 MobiDBLite consensus disorder prediction 329 375 - -
Clacu07g0599 565 MobiDBLite consensus disorder prediction 505 565 - -
Clacu07g0599 565 SUPERFAMILY GAT-like domain 178 309 - -
Clacu07g0599 565 Pfam ANTH domain 31 309 IPR011417 GO:0005543(InterPro)
Clacu07g0599 565 MobiDBLite consensus disorder prediction 356 370 - -
Clacu07g0599 565 SUPERFAMILY ENTH/VHS domain 31 162 IPR008942 -
Clacu07g0599 565 MobiDBLite consensus disorder prediction 329 353 - -
Clacu07g0599 565 ProSiteProfiles ENTH domain profile. 24 161 IPR013809 -
Clacu07g0599 565 Gene3D - 7 161 IPR008942 -
Clacu07g0599 565 FunFam Putative clathrin assembly protein 173 321 - -
Clacu07g0599 565 PANTHER CLATHRIN ASSEMBLY PROTEIN 5 521 IPR045192 GO:0000149(PANTHER)|GO:0005545(PANTHER)|GO:0005546(PANTHER)|GO:0005905(PANTHER)|GO:0006900(PANTHER)|GO:0030136(PANTHER)|GO:0032050(PANTHER)|GO:0048268(InterPro)|GO:0072583(PANTHER)|GO:0072583(InterPro)
Clacu07g0599 565 CDD ANTH_N 32 154 IPR048050 -
Clacu07g0599 565 SMART enth_2 30 161 IPR013809 -
Clacu07g0599 565 FunFam Clathrin assembly protein AP180 6 161 - -
Clacu07g0599 565 MobiDBLite consensus disorder prediction 505 531 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu07g0599 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu06g1238 Clacu-Chr6:23198812 Clacu07g0599 Clacu-Chr7:9397120 3.30E-140 dispersed
Clacu07g0599 Clacu-Chr7:9397120 Clacu11g1368 Clacu-Chr11:23899076 1.50E-174 dispersed
Clacu07g0599 Clacu-Chr7:9397120 Clacu05g1837 Clacu-Chr5:27633433 4.80E-64 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g460 . . . . . . . . Cmo04g01091 . Cma04g01013 Cma04g00065 Car04g00949 Car04g00062 . . . . . . . . . . Cla07g00570 Cam07g0596 Cec07g0663 Cco07g0636 Clacu07g0599 Cmu07g0633 Cre07g0972 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Csa05g01148 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001235 1 2 1 3 2 3 4 3 2 2 2 2 3 1 2 4 3 4 4 3 2 2 2 2 3 3 2 6 2 2 77