Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu07g0600 ATGACGAAGTCCAAGAGTTTTATACACAACCTCATCAGACCATTCAGATTCGGTTCCTCAAGAGATAGGCAGGGCGAGGATGATTTGGAGGAGATTGCTGCTAAGGAACAGAAGGTTATTCAGTTCGAAATCTTAGTTGAAGCTACCAATAATTTCCACCAGAATAACAAGCTTGGCCAAGGCGGATTTGGTCCAGTTTTCAAGGGGAAGTTAAAGGATGGAAGAGTTATTGCAGTTAAGAAGTTGTCGCATTATTCAAAACAAGGGAGAAAGGAGTTTATGACTGAAGCTAAATTGTTGGCTCGTGTGCAGCACAGAAATGTTGTCAATCTGTTGGGATACTGTGTGCATGGTTCAGAGAAACTACTGGTTTACGAATACGTCACGAATGAGAGCCTTGACAAGCTTCTATTTAAATCCAGCAGACGAGGAGAACTTGATTGGAAGAAAAGGTATGACATAATCTTTGGCATCGCACGAGGGTTGCAATATCTTCATGTCGACTCACATAATGTCATTATCCATCGTGACATAAAGGCTAGTAACATTCTGTTGGATGATAAATGGGTCCCTAAGATTGCAGATTTTGGCATGGCTCGCCTCTTCCCTGAAGATCAAACTCATGTCAATACTCGTGTTGCTGGTACAAACGGATATATGGCTCCCGAATATGTGATGCACGGACATCTATCAGCAAAGGCAGATGTTTTTAGCTTTGGTGTTTTAGTTTTGGAACTTATAAGCGGCCAGCGAAATTCGTCATTTAGTTCATTTATGGATGCCGAGAATCTACTTGATTGGGCTTACAAGCTATACAAGAAGGGCAGGAGCTTGGAAATCATGGACCCAACATTAGCATCATCAGCTGTTCCTGACCAAGTTACAATGTGCATTCAGATAGGATTGCTCTGCACACAAGGCGATCCGCATCTACGGCCAGCCATGCCACGTGTAGTTTTAATCCTTTCGAAGAGACATGGTAATTTGGACGAACCAACAAGACCAGGAATACCCGGGTCTCGGTATAGAAGATCTCGTAGGACAAGTGCATCGTCCTCCAACGCTGGTACTTCGGGAACTTCTGGTGCATCCGACTCCTACGCTATGACGAGCAATACTACTGGAACTATAACTGCTACCGCAACGGCAACTGCAACAGCAAACGAACTTGCTTCTGGTTCTTCTCCAGTTAGTCGAGTATCTGCAACAGCAAATGAAGTTGCTTCTGGTTCTTCTTCAGTTAGTCAAGGATACGATACTCGTGGGAAACGTCCGATAGAAGGTTAG 1287 43.9 MTKSKSFIHNLIRPFRFGSSRDRQGEDDLEEIAAKEQKVIQFEILVEATNNFHQNNKLGQGGFGPVFKGKLKDGRVIAVKKLSHYSKQGRKEFMTEAKLLARVQHRNVVNLLGYCVHGSEKLLVYEYVTNESLDKLLFKSSRRGELDWKKRYDIIFGIARGLQYLHVDSHNVIIHRDIKASNILLDDKWVPKIADFGMARLFPEDQTHVNTRVAGTNGYMAPEYVMHGHLSAKADVFSFGVLVLELISGQRNSSFSSFMDAENLLDWAYKLYKKGRSLEIMDPTLASSAVPDQVTMCIQIGLLCTQGDPHLRPAMPRVVLILSKRHGNLDEPTRPGIPGSRYRRSRRTSASSSNAGTSGTSGASDSYAMTSNTTGTITATATATATANELASGSSPVSRVSATANEVASGSSSVSQGYDTRGKRPIEG 428
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 9460817 9465829 + ClG42_07g0060000.10 Clacu07g0600 253198
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu07g0600 428 Gene3D Transferase(Phosphotransferase) domain 1 128 332 - -
Clacu07g0600 428 FunFam Cysteine-rich receptor-like protein kinase 10 129 334 - -
Clacu07g0600 428 Pfam Protein tyrosine and serine/threonine kinase 53 317 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Clacu07g0600 428 ProSiteProfiles Protein kinase domain profile. 52 329 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu07g0600 428 FunFam Cysteine-rich receptor-like protein kinase 10 16 127 - -
Clacu07g0600 428 SMART serkin_6 52 329 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu07g0600 428 MobiDBLite consensus disorder prediction 385 419 - -
Clacu07g0600 428 MobiDBLite consensus disorder prediction 344 368 - -
Clacu07g0600 428 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3 32 358 IPR052059 GO:0004674(PANTHER)|GO:0006468(PANTHER)
Clacu07g0600 428 SUPERFAMILY Protein kinase-like (PK-like) 38 340 IPR011009 -
Clacu07g0600 428 Gene3D Phosphorylase Kinase; domain 1 17 127 - -
Clacu07g0600 428 CDD STKc_IRAK 58 324 - -
Clacu07g0600 428 MobiDBLite consensus disorder prediction 327 368 - -
Clacu07g0600 428 MobiDBLite consensus disorder prediction 385 428 - -
Clacu07g0600 428 ProSitePatterns Serine/Threonine protein kinases active-site signature. 173 185 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu07g0600 Clacu-Chr7:9460817 Clacu10g0613 Clacu-Chr10:8300398 1.60E-80 dispersed
Clacu07g0600 Clacu-Chr7:9460817 Clacu01g2319 Clacu-Chr1:34047119 2.60E-86 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
73686 PF00069 Pkinase 2.20E-49 CL0016 Clacu PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu07g0600 - - - 0.0