Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu07g0636 ATGGCCGGGATTGTCGCCGGCGACAGCGACAGTGCACCGGCTTTGGCTCTACTGGACTTTGTTCGCGATGTTGTTCGAATGTCGGCGCGGACGAACACTGGAGAGGTTTTCAAGAAGGATTGCACCGATCTGGTGCGTCGGATCGTGCTTTTGACGCATTTGTTTGAGGAAATCAGGGACTTCAATGGCGTCCAATTTCGACCTGTTGATGCGTCTTCGTCTTCTTCTTCTTCTTGTGGCGCTGTGACTGTGAGGGATTCGTCTCAGTTTCCATGGCTTTGTGATTTAGTGACGGCATTGAAGGATACTAAGCGCCTCATTTTCATCGCTTCTACTTTCCGGTCCTGCGGCTCTTCTTCTGAAGAAGTTGCCAAGAAGATACTCTTTCAATTCCAATGTGTGACGTGGAAGTTAGAGAAGGCATTGGGCAATCTTCCATATGATCGCCTTGATATATCAGAGGAAGTTCAAGAACAGGTTGAATTAGTGAGAGCTCAATTGAGAAGAGCAGCAGAAAAATATGGGTCTCTGACTGCAATTCCACCATCTGTTGTTCAATCTCAGTTGTTGAAGAAAAATGTGGATCTCTTAAATTTGAACAACTGGGTTGATAACTTTGATGTTGAGGAGAATGGTATTGTTGATCATGAGATTACAGTGAAATTTGATGCATTTCCAAATTGTAGAGGGTTGATGAATGGCGGTGTGGATCAATTGATTTTCAAAGGACTTGAGAAACTTCCATCCTCTTCAGAGGCTTGTTCTAATGGACAGGATAATGACTCTGCCAGAAAGAGTGGGGACCAGGTGAAGAACCCAGATGGAGTTTCAATCCCTGATGATTTTCTATGCCCCATATCCTTGGAAATAATGAGAGATCCTGTTATTGTGTCCACAGGCCAGACGTATGAGAGATCTTATGTACAGAGGTGGATAGATTGTGGGAATACTACTTGTCCCAAAACTCAGCAGAAGCTCCAAAATTTGACTCTCACCCCAAATTATGTGTTGCGAAGTCTCATTAGTCAATGGTGTGTTAATAACAATATTGAGCAACCTACGGGATTAACCAATGGGAAGATCAAAAAGTGTGACGGATCATACCGTGACGTGTGTGAGGAGATGGCAGCCATTGAAACTCTGGTCCGCAAGCTAACTAGCCATTCGATTGAAGAGCGGAGAGCATCTGTGACTGAACTTCGATCTCTATCTAAAAGAAGCACGGATAATAGAATACTGATTGCTGAAGCAGGAGCAATTCCTGCCTTGGTCAATCTATTAACTTCTGATGACGTTTTGATACAAGAAAATGCAGTTACTTCCATTCTCAACCTTTCAATATATGAGAACAACAAGGGATTGATTATGCTTGCTGGTGCAATACCTTCCATTGTTCAAGTTCTTAGAGTTGGAAGTATGGAAGCAAGAGAAAATGCAGCAGCAACACTTTTCAGCTTGTCTCTTGCTGATGAAAATAGGATAATCATTGGTGCTTCTGGGGCTATTCCAGCTCTTGTGGATTTACTTGAAAATGGAAGCTCAAGAGGAAAGAAGGATGCTGCAACAGCACTATTTAATTTGTGCATTTATCAGGGGAACAAGGGAAGGGCTGTGAGGGCAGGGATCATTCCAGCTCTATTAAAGATGCTTACGGACTCAGTTAACTCGATGATCGACGAAGCTCTCACAATAATGTCGGTCCTGGCCAGCCATCAAGAAGCAAAAGTAGCCATGGTGAAAGCCAGTACCATACCTGTTCTAATAGACCTTCTGAGGACCGGATTGCCTCGCAACAAGGAAAATGCTGCTGCTATTTTGCTTGCTTTGTGTAAGCGAGATACCGACAACCTTTCTTGTATAAGTAGGCTTGGCGCCGTGATTCCACTGACAGAGCTTGCCAAGAGTGGCACGGAGAGAGCGAAAAGGAAGGCTACTTCATTGTTGGAGCATCTTCGAAAACTGCAGCAGCTATAG 1974 44.12 MAGIVAGDSDSAPALALLDFVRDVVRMSARTNTGEVFKKDCTDLVRRIVLLTHLFEEIRDFNGVQFRPVDASSSSSSSCGAVTVRDSSQFPWLCDLVTALKDTKRLIFIASTFRSCGSSSEEVAKKILFQFQCVTWKLEKALGNLPYDRLDISEEVQEQVELVRAQLRRAAEKYGSLTAIPPSVVQSQLLKKNVDLLNLNNWVDNFDVEENGIVDHEITVKFDAFPNCRGLMNGGVDQLIFKGLEKLPSSSEACSNGQDNDSARKSGDQVKNPDGVSIPDDFLCPISLEIMRDPVIVSTGQTYERSYVQRWIDCGNTTCPKTQQKLQNLTLTPNYVLRSLISQWCVNNNIEQPTGLTNGKIKKCDGSYRDVCEEMAAIETLVRKLTSHSIEERRASVTELRSLSKRSTDNRILIAEAGAIPALVNLLTSDDVLIQENAVTSILNLSIYENNKGLIMLAGAIPSIVQVLRVGSMEARENAAATLFSLSLADENRIIIGASGAIPALVDLLENGSSRGKKDAATALFNLCIYQGNKGRAVRAGIIPALLKMLTDSVNSMIDEALTIMSVLASHQEAKVAMVKASTIPVLIDLLRTGLPRNKENAAAILLALCKRDTDNLSCISRLGAVIPLTELAKSGTERAKRKATSLLEHLRKLQQL 657
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 10691058 10694217 - ClG42_07g0063600.10 Clacu07g0636 253234
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu07g0636 657 Coils Coil 637 657 - -
Clacu07g0636 657 FunFam RING-type E3 ubiquitin transferase 275 351 - -
Clacu07g0636 657 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 275 351 IPR013083 -
Clacu07g0636 657 FunFam RING-type E3 ubiquitin transferase 361 454 - -
Clacu07g0636 657 SMART arm_5 530 570 IPR000225 GO:0005515(InterPro)
Clacu07g0636 657 SMART arm_5 448 488 IPR000225 GO:0005515(InterPro)
Clacu07g0636 657 SMART arm_5 407 447 IPR000225 GO:0005515(InterPro)
Clacu07g0636 657 SMART arm_5 571 611 IPR000225 GO:0005515(InterPro)
Clacu07g0636 657 SMART arm_5 489 529 IPR000225 GO:0005515(InterPro)
Clacu07g0636 657 SMART arm_5 613 653 IPR000225 GO:0005515(InterPro)
Clacu07g0636 657 Gene3D - 558 656 IPR011989 -
Clacu07g0636 657 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 459 501 IPR000225 GO:0005515(InterPro)
Clacu07g0636 657 SMART Ubox_2 281 344 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Clacu07g0636 657 FunFam RING-type E3 ubiquitin transferase 557 656 - -
Clacu07g0636 657 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 500 542 IPR000225 GO:0005515(InterPro)
Clacu07g0636 657 MobiDBLite consensus disorder prediction 251 275 - -
Clacu07g0636 657 Gene3D - 359 452 IPR011989 -
Clacu07g0636 657 Gene3D - 453 557 IPR011989 -
Clacu07g0636 657 SUPERFAMILY RING/U-box 274 351 - -
Clacu07g0636 657 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 418 460 IPR000225 GO:0005515(InterPro)
Clacu07g0636 657 Pfam U-box domain 278 348 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Clacu07g0636 657 Coils Coil 153 173 - -
Clacu07g0636 657 SUPERFAMILY ARM repeat 368 651 IPR016024 -
Clacu07g0636 657 FunFam RING-type E3 ubiquitin transferase 455 555 - -
Clacu07g0636 657 CDD RING-Ubox_PUB 279 331 IPR045210 -
Clacu07g0636 657 PANTHER U BOX DOMAIN-CONTAINING 36 653 - -
Clacu07g0636 657 Pfam Armadillo/beta-catenin-like repeat 407 446 IPR000225 GO:0005515(InterPro)
Clacu07g0636 657 Pfam Armadillo/beta-catenin-like repeat 490 528 IPR000225 GO:0005515(InterPro)
Clacu07g0636 657 ProSiteProfiles U-box domain profile. 277 351 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu02g2083 Clacu-Chr2:34060589 Clacu07g0636 Clacu-Chr7:10691058 1.30E-60 dispersed
Clacu05g2310 Clacu-Chr5:31476280 Clacu07g0636 Clacu-Chr7:10691058 8.40E-09 dispersed
Clacu06g0945 Clacu-Chr6:12850835 Clacu07g0636 Clacu-Chr7:10691058 1.30E-16 dispersed
Clacu07g0636 Clacu-Chr7:10691058 Clacu11g0750 Clacu-Chr11:7341749 9.60E-40 dispersed
Clacu07g0636 Clacu-Chr7:10691058 Clacu01g0615 Clacu-Chr1:6458410 6.50E-97 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu07g0636 - - - 0.0