Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu07g0657 ATGAAGCTGTCTTTCATTTCGATTCCCACTTCTTTTCGCTTTGAAAACCATCAAGGCATCAACGCACGCCTCTGTGGACCCCTTCACAAGAATATGATTGAAAAGGAATTTTTCACTGAATATGGTGAAGCTACTCAATATGAAATTGAAGAAGTAATAGGTAGAGGGAGCTATGGAGTTGTTGCATCTGCCATAGACACTCATTCTGGTGAGAAAGTTGCCATCAAGAAGATAAATAATGTCTTCGAGCATGTTTCTGATGCCACACGGATTCTAAGAGAAGTTAAGCTCCTTAGGTTTCTTCGTCATCCTGATATTGTTGATATAAAACATATAATGCTCCCTCCATCCAGAAGGGATTTCAAAGATTTGTACATTGTTTTTGAGTTGATGGAGTGTGATCTTCATCATGTACTCAAGACTAATGATGATCTCACTCCTCAGCATCATCAGTTTTTCTTGTATCAACTTCTTAGAGCCTTGAAATATATACATTCAGCGCATGTGTTCCATAGAGATCTGAAGCCGAAGAATATACTTGCCAATGCAGACTGCAAGCTGAAGATCTGTGACTTTGGACTTGCACGTGCATCTTTTAGTGATGCCCCATCTGCTATTTTTTGGACTGATTATGTGGCTACTCGATGGTACCGTGCTCCTGAACTCTGTGGTTCTTTTTTCTCAAAGTATACACCAGCTATTGATATTTGGAGCATAGGATGTATTTTTGCTGAAATGTTGGCAAGCAAGCCTTTGTTTCCTGGGAAAAGTGTTGTCCATGAGCTGGATCTAATAACTGACCTACTTGGTACTCCTTCAGCTGAATGTATTGCTAAGATTCGTAATGAAAAGGCTAAAAGGTATTTGAGTGGCATGAGAAAAAAGAATCCAATACCTCTGTCTAGAAAGTTCCCGAATGCAGATCCACTAGCTCTTCGTTTACTTGAACGCCTGCTTGCATTTGATCCTGAGGATCGTCCTTCTGCAGAGGAGGCATTAGCTGATCCTTATTTCCATGGACTGGCAAATCTGAAGGATGAACCATCTAGGCAACCCATTTCAAAACTCGAGTTTGAGTTTGAAAGGAGAAAGTTGACCAAAGATGACGTCAGAGAGCTTATCTATAGAGAAATTTTAGAGTATCACCCTCAAATGCTACAGGAATACCTTCAAGGTTCTGGGAGTCACTTTGTGTATCCCAGTGGAATTGATCGATTCAAGCGACAATTTGATCATCTTGAGGAACGTTCTGGTAAAGGTGAGAGAGGCAGTCCAGTTCTAAGGAAGTATGCCTCCTTGCCTAGGGAGCGAATTTATATGCCAATAAATGAAGATGATGACGAAAAACGTAAAACAGAACAACAAAATGCAGCTTCAGCTGAACATGTAGCTCTTCAAAGCCCTCCTGGACCTGCTTATTCATTAACCGCTCGGAACGGTTCTGTTCAATGGTTGCACGGAAGGAAAGAATACAACATTGCTAGCCTTCCTCAGATTCTTAATTTGTAA 1509 40.82 MKLSFISIPTSFRFENHQGINARLCGPLHKNMIEKEFFTEYGEATQYEIEEVIGRGSYGVVASAIDTHSGEKVAIKKINNVFEHVSDATRILREVKLLRFLRHPDIVDIKHIMLPPSRRDFKDLYIVFELMECDLHHVLKTNDDLTPQHHQFFLYQLLRALKYIHSAHVFHRDLKPKNILANADCKLKICDFGLARASFSDAPSAIFWTDYVATRWYRAPELCGSFFSKYTPAIDIWSIGCIFAEMLASKPLFPGKSVVHELDLITDLLGTPSAECIAKIRNEKAKRYLSGMRKKNPIPLSRKFPNADPLALRLLERLLAFDPEDRPSAEEALADPYFHGLANLKDEPSRQPISKLEFEFERRKLTKDDVRELIYREILEYHPQMLQEYLQGSGSHFVYPSGIDRFKRQFDHLEERSGKGERGSPVLRKYASLPRERIYMPINEDDDEKRKTEQQNAASAEHVALQSPPGPAYSLTARNGSVQWLHGRKEYNIASLPQILNL 502
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 11992018 11997519 + ClG42_07g0065700.10 Clacu07g0657 253255
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu07g0657 502 CDD STKc_TDY_MAPK 46 383 - -
Clacu07g0657 502 FunFam Mitogen-activated protein kinase 362 384 - -
Clacu07g0657 502 Pfam Protein kinase domain 47 338 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu07g0657 502 ProSiteProfiles Protein kinase domain profile. 47 338 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu07g0657 502 FunFam Mitogen-activated protein kinase 133 361 - -
Clacu07g0657 502 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 44 379 IPR050117 GO:0004674(PANTHER)|GO:0004707(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0035556(PANTHER)
Clacu07g0657 502 Gene3D Transferase(Phosphotransferase) domain 1 133 361 - -
Clacu07g0657 502 MobiDBLite consensus disorder prediction 440 456 - -
Clacu07g0657 502 MobiDBLite consensus disorder prediction 440 471 - -
Clacu07g0657 502 SUPERFAMILY Protein kinase-like (PK-like) 44 343 IPR011009 -
Clacu07g0657 502 ProSitePatterns MAP kinase signature. 82 185 IPR003527 GO:0004707(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu07g0657 502 FunFam Mitogen-activated protein kinase 34 139 - -
Clacu07g0657 502 Gene3D Phosphorylase Kinase; domain 1 63 384 - -
Clacu07g0657 502 ProSitePatterns Protein kinases ATP-binding region signature. 53 77 IPR017441 GO:0005524(InterPro)
Clacu07g0657 502 SMART serkin_6 47 338 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu03g0975 Clacu-Chr3:14826104 Clacu07g0657 Clacu-Chr7:11992018 6.90E-255 dispersed
Clacu07g0657 Clacu-Chr7:11992018 Clacu09g2259 Clacu-Chr9:37358165 7.00E-184 dispersed
Clacu07g0657 Clacu-Chr7:11992018 Clacu06g1542 Clacu-Chr6:26356467 1.20E-207 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
73687 PF00069 Pkinase 3.30E-67 CL0016 Clacu PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu07g0657 - - - 0.0