Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu07g0694 ATGGAGAAGGAAATGAAGAAGACGAGCTTGAAGATGGAGAAGGAAATGACCGAAGACGAGCCTGAAGAAACTGAAGAAGACGTGAGATGGTTGTACGAAATTCAGAGGGGGCCAGAGTCTGTGTTGCAGTTATGGGCTTGTAGCTTCTACTCTGTCAATCACTTCCCAATGGATCCCCCAACCTCCTACCGTAGTCGCAGAACCGCCAACAAATCTGAGCTCTATTCCACAGTTGTCATCCATTCCAATTCTGATTCCGACTCCGACAACAATCCTGACGATCGGAATCTTCACCCTCCACGAAGGCCACCCAGCGAAGGACAAGACCTTTACGCCACAATGCTCTATAAGGACGTTGATAAGCCCCGCGGCGACGACGACGACGACGATGATTCCTCTCTCCCTCCTCTCCTCAAACGTCTTCCCAAGGATTTCGGTGGCGGAGCCCCAATTGACTACGAGGACGACCATGCTTTTGATTTCGATCACGATACTGAAGACTTCGGTACCATGATCGTCAAGACGGACAGAAATCGCCCTCGAAATCGCTCTATGTCTTCTTCAGTTTCGACGAAGCCTCGAACTTCGCCGCTGCCGTTTATGAACTTTCAGCCGGGGAGCCCCGGGAAGAGAGCTGGCAGTGAAGAAGGCGACGACAGCGAGGAAGATGATGGTGATGAGTATTCTACGTTTGTGGTGAGGTCCACGGGGAGGTCGCGGAACAGAGAATCTGTTAGTGGGACTGTTGTTCGAAGGACTGCTGGTAGTCGCAGTGGTTCCAGAGATGGAGGCGGAGGACATGAGGGGTCCACGATGGGCAGAGCGGTCGCCAGTATGCAAGGTATGGGAGAGTTAGGGTTTGGGAAGCAGAGGAAGGGGAATGGATCACCGAGGAGTGAGGAAGGCGGTGGTCGGATACGCAGTAAGGTATCCTCAAGTTCGATTCCGGAAAGCATCACCAGGGAAGATCCACATTCTAAGTATGAATTGCTCAACGAACTTGGAAAGGGGTCCTATGGGGCTGTATATAAAGCAAGAGATATTAAGACCTCTGAGCTGGTTGCTATCAAGGTCATTTCTTTATGTGAAGGGGAGGAAGGATATGAAGAAATTCGTGGTGAAATTGAGATGTTGCAGCAATGCAGTCATCCAAATGTTGTTCGCTATCTTGGGAGCTATCAAGGAGAAGAGTATCTATGGATAGTAATGGAGTACTGTGGGGGTGGCAGTGTTGCTGACTTGATGAATGTTACCGAGGAACCTCTAGAGGAATATCAGATTGCATATATCTGTAGGGAGGCATTGAAGGGCCTCACTTATCTTCATTCAATATTCAAAGTTCACAGAGATATCAAGGGTGGTAATATTTTGTTAACTGAGCAAGGAGATGTCAAGTTGGGCGATTTTGGAGTTGCAGCCCAGCTGACTAGGACCATGTCAAAGCGCAATACATTCATTGGCACTCCACATTGGATGGCTCCAGAAGTTATTCAGGAAAGTCGATACGATGGGAAGGTGGATGTGTGGGCTCTTGGTGTTTCTGCTATTGAAATGGCTGAGGGGCTTCCTCCAAGATCAGCAGTGCATCCAATGAGGGTTTTATTCATGATATCGATTGAGCCAGCTCCAATGCTTGAAGACAAAGAAAAATGGTCCTTGTTGTTCCATGATTTTGTTGCAAAGTGTCTGACAAAAGATCCCCGTTCACGTCCTGCTGCTTCTGAAATGTTGAAGCACAAATTCATTGAGAAATGCAGATGTGGGGCATCGGCAATGTTGCCCAAGATTGAAAAAGCTAGGAAAATCAGGACTTTAATGGCTCAGCAAGCGCATAGTATTGCTCCAGATGCATCAGGAGATGGTACCATAGTAGCTGCAAATTTGAATCAAGATTACGGAGATACTGTTCCTTCAAAGCCTCAGAATATTGGACTTCAGGTAGCAAATGAAATGGCAGCTGGTGGCACATGGAGGAAGCAAGAGCAATCCGGCACTGAATTTGTAGCAGAAGGTACTTTTGGCACTGTAATAGTCCATGATGGAGATGAGAATGATAAGGTGGCCTCTCAACTGGATATTGGCATTGCTGAACCACCAACTGGTTCCTTGCGCAATCAGAGCCTATCCGTTAGTGTAACTAGAGTCGACTCAAGTGTGCTGGATCGTACAGGCGGTATTGTAAATAATATTCTTGATGGAAAATCAGATCCCACCATGCATGCATCTTCACCTTCATTCTTGGGTATTCATGAGCATAACACATTGAAGAATGAAACTGTCAGCCGAAAATCATTTGCTCTGCAGGACAAGCTTTGGTCCATTTATGCAGCGGGTAATACTGTACCCATTCCGTTCTTGAGGGCTACTGACATATCCCCTATTGCTTTGTTATCTGACAATGTCCTTGGAGGCGTGCAGCATGATAATAGGGGTACCGTAGCAGTGGAAACACTTCAGGAACTTTTCACTGGTGATGGACAATCAAAGAAGGGTCGTAGGGGTCAAAATGAGATGCCCCTTCCACCCAGTGTTTATCAAAGACTTACTTCAAGTCCAACACTATTGAACCTTGCCCAGGCTTTAGCTTACCACAGAATGTGTTATGAAGATATGCCGCTTCAGGAGTTGCAGGCAACTCAAGAACAACAAACCATTCAAAATCTTTGTGATACTCTTAGAACTATCCTTCGATTGTAG 2697 46.83 MEKEMKKTSLKMEKEMTEDEPEETEEDVRWLYEIQRGPESVLQLWACSFYSVNHFPMDPPTSYRSRRTANKSELYSTVVIHSNSDSDSDNNPDDRNLHPPRRPPSEGQDLYATMLYKDVDKPRGDDDDDDDSSLPPLLKRLPKDFGGGAPIDYEDDHAFDFDHDTEDFGTMIVKTDRNRPRNRSMSSSVSTKPRTSPLPFMNFQPGSPGKRAGSEEGDDSEEDDGDEYSTFVVRSTGRSRNRESVSGTVVRRTAGSRSGSRDGGGGHEGSTMGRAVASMQGMGELGFGKQRKGNGSPRSEEGGGRIRSKVSSSSIPESITREDPHSKYELLNELGKGSYGAVYKARDIKTSELVAIKVISLCEGEEGYEEIRGEIEMLQQCSHPNVVRYLGSYQGEEYLWIVMEYCGGGSVADLMNVTEEPLEEYQIAYICREALKGLTYLHSIFKVHRDIKGGNILLTEQGDVKLGDFGVAAQLTRTMSKRNTFIGTPHWMAPEVIQESRYDGKVDVWALGVSAIEMAEGLPPRSAVHPMRVLFMISIEPAPMLEDKEKWSLLFHDFVAKCLTKDPRSRPAASEMLKHKFIEKCRCGASAMLPKIEKARKIRTLMAQQAHSIAPDASGDGTIVAANLNQDYGDTVPSKPQNIGLQVANEMAAGGTWRKQEQSGTEFVAEGTFGTVIVHDGDENDKVASQLDIGIAEPPTGSLRNQSLSVSVTRVDSSVLDRTGGIVNNILDGKSDPTMHASSPSFLGIHEHNTLKNETVSRKSFALQDKLWSIYAAGNTVPIPFLRATDISPIALLSDNVLGGVQHDNRGTVAVETLQELFTGDGQSKKGRRGQNEMPLPPSVYQRLTSSPTLLNLAQALAYHRMCYEDMPLQELQATQEQQTIQNLCDTLRTILRL 898
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 13901304 13929913 - ClG42_07g0069400.10 Clacu07g0694 253292

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Clacu07g0694 898 ProSiteProfiles Protein kinase domain profile. 328 582 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu07g0694 898 Gene3D Transferase(Phosphotransferase) domain 1 324 617 - -
Clacu07g0694 898 SMART serkin_6 328 582 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu07g0694 898 MobiDBLite consensus disorder prediction 232 255 - -
Clacu07g0694 898 MobiDBLite consensus disorder prediction 285 324 - -
Clacu07g0694 898 FunFam serine/threonine-protein kinase dst1 isoform X1 325 615 - -
Clacu07g0694 898 MobiDBLite consensus disorder prediction 182 202 - -
Clacu07g0694 898 MobiDBLite consensus disorder prediction 1 26 - -
Clacu07g0694 898 MobiDBLite consensus disorder prediction 81 151 - -
Clacu07g0694 898 SUPERFAMILY Protein kinase-like (PK-like) 325 583 IPR011009 -
Clacu07g0694 898 MobiDBLite consensus disorder prediction 87 102 - -
Clacu07g0694 898 MobiDBLite consensus disorder prediction 172 273 - -
Clacu07g0694 898 CDD STKc_MAP4K3_like 327 582 - -
Clacu07g0694 898 ProSitePatterns Protein kinases ATP-binding region signature. 334 357 IPR017441 GO:0005524(InterPro)
Clacu07g0694 898 Pfam Protein kinase domain 328 582 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu07g0694 898 FunFam Aurora kinase A 320 409 - -
Clacu07g0694 898 PANTHER SERINE/THREONINE-PROTEIN KINASE TAO 265 621 IPR050285 GO:0006468(PANTHER)|GO:0035556(PANTHER)|GO:0043408(PANTHER)
Clacu07g0694 898 MobiDBLite consensus disorder prediction 1 17 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu07g0694 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu07g0694 Clacu-Chr7:13901304 Clacu11g1352 Clacu-Chr11:23296682 0.00E+00 dispersed
Clacu07g0694 Clacu-Chr7:13901304 Clacu03g1576 Clacu-Chr3:29339844 8.50E-39 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Clacu11g1974 . 99 786 MAP Kinase Kinase Kinase Kinase AT1G53165 63.7 3.0e-225 778.5
Clacu07g0694 . 326 586 MAP Kinase Kinase Kinase Kinase AT1G53165 53.4 3.9e-68 256.5
Clacu11g1352 . 254 514 MAP Kinase Kinase Kinase Kinase AT1G53165 53.1 7.4e-67 252.3
Clacu11g1974 . 99 783 MAP Kinase Kinase Kinase Kinase AT3G15220 65.9 3.6e-231 798.1
Clacu07g0694 . 326 586 MAP Kinase Kinase Kinase Kinase AT3G15220 51.9 1.8e-68 257.7
Clacu11g1352 . 254 514 MAP Kinase Kinase Kinase Kinase AT3G15220 51.5 3.3e-67 253.4
Clacu07g0694 . 60 898 MAP Kinase Kinase Kinase Kinase AT1G69220 58.0 3.1e-242 835.1
Clacu11g1352 . 4 826 MAP Kinase Kinase Kinase Kinase AT1G69220 58.7 1.2e-241 833.2
Clacu09g1946 . 1 668 MAP Kinase Kinase Kinase Kinase AT5G14720 66.2 5.6e-253 870.5
Clacu05g0512 . 32 385 MAP Kinase Kinase Kinase Kinase AT5G14720 51.3 1.5e-96 350.9
Clacu10g0086 . 7 721 MAP Kinase Kinase Kinase Kinase AT4G24100 65.0 5.8e-248 854.0
Clacu10g0086 . 11 722 MAP Kinase Kinase Kinase Kinase AT4G10730 64.8 2.8e-247 851.7
Clacu10g0086 . 5 369 MAP Kinase Kinase Kinase Kinase AT1G70430 56.8 4.7e-118 422.2
Clacu09g1946 . 1 328 MAP Kinase Kinase Kinase Kinase AT1G23700 59.2 2.6e-103 372.9
Clacu10g0086 . 15 306 MAP Kinase Kinase Kinase Kinase AT1G23700 50.8 2.3e-75 280.0
Clacu05g0512 . 32 499 MAP Kinase Kinase Kinase Kinase AT4G14480 59.0 2.6e-143 505.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003387 1 1 1 1 1 2 1 2 3 0 3 2 1 1 1 1 3 2 1 3 1 3 1 1 1 2 1 1 4 1 47
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
73688 PF00069 Pkinase 1.40E-67 CL0016 Clacu PK