Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu07g0742 ATGTTCACCAAAATGGCACCTTACAGGGCTGGAGTCATTTCGGTTCGCTATCGTCGGACGCTTTGCCACAAACAGGGCGGCATGCGTTTCGAGCTCAAAGGGAACCCTTATTGGCTTCTTGTGTTGCTCTACAATGTTGGTGGTGCTGGTGATGTTGTTGATGTTAAGATTAAAGGCTCTTCTACTGGCTGGCTTCAAATGTCAAGGAATTGGGGTCAAAATTGGCAGGTTGGTACCTTTTTAGTGGGACAAAGTTTGTCCTTTAGAGTCGCTACTAGTGATGGGAAGACTATTGAATTTGATAATGTTGTGCCAAGCTCTTGGCAGTTAGGGCAGAACTTTGAAGGAAAGTATAATTTTTAG 363 44.35 MFTKMAPYRAGVISVRYRRTLCHKQGGMRFELKGNPYWLLVLLYNVGGAGDVVDVKIKGSSTGWLQMSRNWGQNWQVGTFLVGQSLSFRVATSDGKTIEFDNVVPSSWQLGQNFEGKYNF 120
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 17802650 17803012 + ClG42_07g0074200.10 Clacu07g0742 253340
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu07g0742 120 SUPERFAMILY PHL pollen allergen 24 115 IPR036749 -
Clacu07g0742 120 PRINTS Expansin/Lol pI family signature 64 78 IPR007118 GO:0005576(InterPro)
Clacu07g0742 120 PRINTS Expansin/Lol pI family signature 10 26 IPR007118 GO:0005576(InterPro)
Clacu07g0742 120 PRINTS Expansin/Lol pI family signature 102 116 IPR007118 GO:0005576(InterPro)
Clacu07g0742 120 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 37 116 IPR007117 -
Clacu07g0742 120 Gene3D - 27 120 IPR036749 -
Clacu07g0742 120 PRINTS Expansin signature 102 118 IPR002963 GO:0009664(InterPro)
Clacu07g0742 120 PRINTS Expansin signature 38 59 IPR002963 GO:0009664(InterPro)
Clacu07g0742 120 PRINTS Expansin signature 26 38 IPR002963 GO:0009664(InterPro)
Clacu07g0742 120 PRINTS Expansin signature 2 15 IPR002963 GO:0009664(InterPro)
Clacu07g0742 120 PRINTS Expansin signature 73 94 IPR002963 GO:0009664(InterPro)
Clacu07g0742 120 PANTHER EXPANSIN-A15 1 117 IPR002963 GO:0009664(InterPro)
Clacu07g0742 120 Pfam Expansin C-terminal domain 28 105 IPR007117 -
Clacu07g0742 120 FunFam Expansin 27 120 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu07g0742 Clacu-Chr7:17802650 Clacu11g0714 Clacu-Chr11:7020692 2.60E-36 dispersed
Clacu07g0742 Clacu-Chr7:17802650 Clacu03g0145 Clacu-Chr3:1596699 3.10E-37 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu07g0742 - - - 0.0