Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu07g0778 ATGGAGTTTGGGCCGGTTTCTCTAGTATTCAATTACGTAGCTCCATGTCATCAACTACTTCGGCGAGAACGTATTTCCGATTCAGTCGTCTTCAACCGGCCGCGGCCACCCAGCTCTGGCACTGCGTCGTTCCACATGAAGAGCTCGTTCTGTGGCTCACTCGCTCTGTGTTCTCTTGCGAGTGCAACTACAACAGTCACCGCCATAGCCGTGCTGAACCAACCTCCGACTCTCTACACCGGCGGATCCGATGGATCAATCATCTGGTGGAAATTATCAATCTCCGATTCCAGCACGGAAATTGAACCGGTTGCTGTATTGTGTGGCCATGCTACGACAATAGCGGATCTTGGCATTTGTTACCCTGTTATCTCGGGGACGGGTAAGACAGATATTTCAAGTAATGCCGAGGTGAACTCCACTTCAGAAATTTGTGGTGCACTAGTAAGTGCGTGTTCTGATGGTGTGCTGTGCATTTGGAGCAGGAGAAGTGGACATTGCAGGCGCAGAAGAAAACTACCTGCTTGGGTTGGGAGTCCATCCATGGTGCGTACGATTCCATCGAAACCAAGATATGTATGCATTGGATGCTATTTTATTGATGGTGCTCATTCCTATGATAATCACTCAGTTGATTCTGCTGAAAGGATCGAGGTTTCAGCTGATAGAGGATATCAGCATAAAAAGCATTCCAAATGCTCTGTCGTTATTGTTGATACATATACTCTTACCATTGTTGAAACTGTTGTGCATGGAAATTTGTCTATTGGCTCCTTGAGGTATATGGCCATAGTCTCACCTTTAACGGGTGAGGGCAATTATTCAGCAGCTTTAGTTGATTCATTTGGTCGACTGCAGATGATTTCGTTATCTAAGGAGTCTGACCAGGAAGTCGATGAGGCGAGCTTGCACAATTGTTTGCAAGTGGATATTCCTGTTTGGACTGAGGTATTGAATGAGAGAGGCCAGGTTGTGTCAGTTGCGACTCAACACAATGTCATTGCCTTTTTGTTGCCTGATCGTTGTGTGTTCAAGCTTTTACTCAGTGGTCTCGTGGTTGGAGAGGTTTTTTTTGTGGACAGTATTTTTGGCGTTAATGGGTTTACCACTCAAGCTCATGTTTCTGGAGCAATGTTTCTTGATGGTAGAGATGAATTGAATATCATGAATAACCAGGAATGCCATGAAACATTTGTTGAGAAATTTGCTGTGTGGAATTCTGGAGGTCATGCAATTGTCTTCATGATATCAATTACAAATAAGATATTTGAATATAAACCTCTTTATGAAATTCCTGCATCTTGTAATTCCTCACATATGGGATTGTCACTATCGTTCATTCAACTAAATCAACATCTCATCCGCATTGAATCACTTAGCTCTCAAATTGAAGAGCCTTTTCATTGGACTTCTAATATCACAATCTGGTCACTGCAAGAGAAACATCCTCTTCATGGAAAACTGTTGAAATGCAGAATGGTTGGTGAATCTAGTTCATTGACAGAATGGATTCAAGATTCTACTCACCACAGTGAATTTGCAGGGAAATATGGTGTTCCATCTGGATTGAAATCTGATTCTAGTTCTGAAAGTGTAAATGATATATATTTTGGTGACTGTAACAATTTTGTACAGAAGGGAGAAATAATATCTTCTTCTATGGTTATTTCTGATAGTTTATCTACTCCTTATGCAGTGGTTTATGGTTACTCTAGTGGCGATGTACAAATTTTAAAACTAGATTTGTTTCAAGGGTTGTCTTCTCATAGAGGAAGTCCACAATATGAAGCGCATCATCAGGTTCCACAACTATATCTTTCAGGTCACACGGGACCTGTACTATGTTTGGCGGTTCATCGGTTAGTGAGCAAAAGTAATGAACAATTTCTATTATCTGGAAGCATGGATTGCACCATTCGAATTTGGGATCTTGAATCTGGGAATCTTGTCATGGTGATGCACCACCATGTGGCTCCTGTGAGGCAGATAATTCTTCCTCCTGCTCATACCGACCATCCTTGGAGTGATTGTTTTCTTTCAGTTGGTGAGGATTCTTGTGTTGCTCTTGCTTCCTTAGAGACTTTAAAGGTGGAGAGAATGTTTCCTGGACATCGCAACTATCCTGAAAAAGTTGTGTGGGATAGTGTAAGAGGTTATATTGCATGCATGTGCAGTAACCATTCCAGTACTTCTGACACTGTTGATATATTGTATATTTGGGATATTAAGACGGGTGCTCGTGAGCGGATTATTCCTGGGACAGCATCTCAGTCAGTATTCGATAATTTTTGTAAAGGAATTGGCAAGAACTTTTCTGGCCCTATTCTGAATGGAAATACCTCTGCTTCATCTCTACTCTTTACAACAGTCGAAGACGGGAGTCTTTCTGATTCTCTTTCAAGCTATGGTAAGTCCACTGATAAATTAAAGGCAATGGCAGATCTGAGTAATAAGGTAGAATCACATACGTCCAACGGACATGCTAGAAGACGGAAGTCTGCTAAATCATTTCTAAACTCTCTCTTTGATTTTGAGAGTGGAAAGCATCCCATCAAGTGCTCATGTCCATTCCCTGGGATTGCTACAATGAGCTTCGATCTTACAGCATTAATGTCTTTCAATCAGAAGTCTAAGTCATTAGCAACTAGTAGTAATCTTCAAGATACTGCAATTCCTAAGGATCAGCAAGCTAGGATGTCAAGTCCCAGTGCTAGGGATAAGAAGATGGACAATTCTTTGGCCCATGAAATTTCAACCGATTATGGTGAAGAGCTTAACTGGATTAGTGTGTATGAAGAATGTTTAATTCGGTTCAGCTTGTCCTTTTTGCATGTATGGGGTGTTGACAGTGATCTTGACACTTTGCTAGTAACTGACATGAAGTTGAAAAAACCAGAGAGCTTTATGGTGGCTTCTGGTTTGCAGGGGGATAAAGGTTCACTAACAGTGTCATTTCCTGGAATGAAAGCTGTTCTTGAGCTCTGGAAGTCATCTGCAGAATTTTGTGCTATGAGGTCACTCATGATTCTGTCTCTTGCTCAGCACATGATTAGCTTGTTTCACTCAGGTTCATCTGCCAGCAGTGCGCTGGCAGCTTTCTATATGAGGAATTTTGTGGACAAAGTTCCAGATATAAAGCCACCTTTACTTCAGCTTTTAGTGAGCTTCTGGCAAGATGAAAGTGAACATGTACGTATGGCTGCTCGTTCTTTGTTCCATTGTGCAGCTTCACGTGCAATTCCACCAGCACTAAGAGGTGGAAGATCAACCGAGCATGGAAGTTCGAGTGAAATGGGAGATAGTGACACTGAACTCGATGGTTTGAGTATGAATGAGAAGTCTGATTACATGATATCATCAGACTGCATTCCTAAAAGCAAAGAGGTTTCTCAGGTTGAGGAATTCAACATCCGCTCCTGGTTAGAATCTTATGAAATGCACGATTGGATTTCTTGCGTAGGTGGAACGAGCCAAGATGCAATGACTTCTCATATTATAATTGCAGCAGCACTAGCCATTTGGTATCGCAGTCTTGTGAAGAAAAGCCTTCCAATGCTGGTTGTCCATTCATTAGTGAAGTTGGTAAAGTCCATGAACGAGAAATACAGTTCCACTGCTGCAGAGCTACTTGCTGAAGGTATGGAGAGCACATGGAAGACTTGTCTGGGTAATGAAATTCCTCATCTCATTGAAGATGTATTACTCCAGCTGGAATATGTGAGTGGTTCGTCTGCAAATCAGTTAGTTCAAAATTCATCCCTTCCAGTGGGCATTCGCGAAACTTTGGTTGAAGTTCTTCTCCCAAATCTAGCAATGGCCGATGTACCAGGATTCTTGACAGTAATAGAAAGCCAAATTTGGTCTACTGCATCTGATTCACCTGTTCATCTGGTGTCACTTAGGACACTGATCAGGGTTGTGCGTGGTTGTCCTAGAAGCCTGGCACCATATCTGGACAAGGCTGTTAACTTTATTTTGCAAATCATGGACCCCAGCAACTCAGTCATGCGCAAAATTTGTTATCAGAGCTCAATGTCTGCTCTAAAGGAAGTTGTGCATGTGTTTCCAATGGTATCGTTAAATGATTCATGGACCAGATTGGCAGTTGGTGATGTTATTGGAGAGATTAACAGTGCTAGCATTCGTGTATATGATCTACAGAGTGTTACAAAGATTAAGGTTTTGGATGCAACTGGACCTCCTGGACTTCCAAGTTTGCTTCCAGCAGGTTCAGAAATGCCTTTAAGGATCTCAATATCAGCTCTGAGCTTTTCCCCTGATGGCGAGGGGGTTGTTGCCTTTTCTGAACATGGCTTAATGATCCGATGGTGGTCACTGGGATCTGTATGGTGGGAGAAACTAAGCCGCAACTTTGTTCCTGTTCAATGCACAAAAGTGATATTTGTTCCTCCATGGGAAGGATTTTCGCCCAATTCTTCGAGGTTAAGCATTATGGCGAGTGCAACAGAACATCATAGGCAAGCAGATGTGCAGGACAATGTAAGGGGCTTGAGTCATGCAGACTTTTTGAAGATTTTGATTCACAGTCTCGATCTTTCTTATCGGCTAGAATGGACTGATGAGCGAAAATATTCAATTCGTTCTTCTTCACAACAGTTTTCGATCTTGTCTTCTCGTGAGTTACCGATCTCAAGATCTGCTTTCTTTGAGTCTCCATGTGTACATTACAAAAGACTTTACAAGCCATTAATTAGAGAAGAAAATGATGATGTGATTTCTTTCCCAACCTGA 4752 42.0 MEFGPVSLVFNYVAPCHQLLRRERISDSVVFNRPRPPSSGTASFHMKSSFCGSLALCSLASATTTVTAIAVLNQPPTLYTGGSDGSIIWWKLSISDSSTEIEPVAVLCGHATTIADLGICYPVISGTGKTDISSNAEVNSTSEICGALVSACSDGVLCIWSRRSGHCRRRRKLPAWVGSPSMVRTIPSKPRYVCIGCYFIDGAHSYDNHSVDSAERIEVSADRGYQHKKHSKCSVVIVDTYTLTIVETVVHGNLSIGSLRYMAIVSPLTGEGNYSAALVDSFGRLQMISLSKESDQEVDEASLHNCLQVDIPVWTEVLNERGQVVSVATQHNVIAFLLPDRCVFKLLLSGLVVGEVFFVDSIFGVNGFTTQAHVSGAMFLDGRDELNIMNNQECHETFVEKFAVWNSGGHAIVFMISITNKIFEYKPLYEIPASCNSSHMGLSLSFIQLNQHLIRIESLSSQIEEPFHWTSNITIWSLQEKHPLHGKLLKCRMVGESSSLTEWIQDSTHHSEFAGKYGVPSGLKSDSSSESVNDIYFGDCNNFVQKGEIISSSMVISDSLSTPYAVVYGYSSGDVQILKLDLFQGLSSHRGSPQYEAHHQVPQLYLSGHTGPVLCLAVHRLVSKSNEQFLLSGSMDCTIRIWDLESGNLVMVMHHHVAPVRQIILPPAHTDHPWSDCFLSVGEDSCVALASLETLKVERMFPGHRNYPEKVVWDSVRGYIACMCSNHSSTSDTVDILYIWDIKTGARERIIPGTASQSVFDNFCKGIGKNFSGPILNGNTSASSLLFTTVEDGSLSDSLSSYGKSTDKLKAMADLSNKVESHTSNGHARRRKSAKSFLNSLFDFESGKHPIKCSCPFPGIATMSFDLTALMSFNQKSKSLATSSNLQDTAIPKDQQARMSSPSARDKKMDNSLAHEISTDYGEELNWISVYEECLIRFSLSFLHVWGVDSDLDTLLVTDMKLKKPESFMVASGLQGDKGSLTVSFPGMKAVLELWKSSAEFCAMRSLMILSLAQHMISLFHSGSSASSALAAFYMRNFVDKVPDIKPPLLQLLVSFWQDESEHVRMAARSLFHCAASRAIPPALRGGRSTEHGSSSEMGDSDTELDGLSMNEKSDYMISSDCIPKSKEVSQVEEFNIRSWLESYEMHDWISCVGGTSQDAMTSHIIIAAALAIWYRSLVKKSLPMLVVHSLVKLVKSMNEKYSSTAAELLAEGMESTWKTCLGNEIPHLIEDVLLQLEYVSGSSANQLVQNSSLPVGIRETLVEVLLPNLAMADVPGFLTVIESQIWSTASDSPVHLVSLRTLIRVVRGCPRSLAPYLDKAVNFILQIMDPSNSVMRKICYQSSMSALKEVVHVFPMVSLNDSWTRLAVGDVIGEINSASIRVYDLQSVTKIKVLDATGPPGLPSLLPAGSEMPLRISISALSFSPDGEGVVAFSEHGLMIRWWSLGSVWWEKLSRNFVPVQCTKVIFVPPWEGFSPNSSRLSIMASATEHHRQADVQDNVRGLSHADFLKILIHSLDLSYRLEWTDERKYSIRSSSQQFSILSSRELPISRSAFFESPCVHYKRLYKPLIREENDDVISFPT 1583
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 19668320 19700059 + ClG42_07g0077800.10 Clacu07g0778 253376

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Clacu07g0778 1583 MobiDBLite consensus disorder prediction 1083 1103 - -
Clacu07g0778 1583 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 606 648 - -
Clacu07g0778 1583 Gene3D - 571 852 IPR015943 GO:0005515(InterPro)
Clacu07g0778 1583 MobiDBLite consensus disorder prediction 884 910 - -
Clacu07g0778 1583 SUPERFAMILY WD40 repeat-like 57 753 IPR036322 GO:0005515(InterPro)
Clacu07g0778 1583 ProSitePatterns Trp-Asp (WD) repeats signature. 630 644 IPR019775 -
Clacu07g0778 1583 SMART WD40_4 100 161 IPR001680 GO:0005515(InterPro)
Clacu07g0778 1583 SMART WD40_4 694 741 IPR001680 GO:0005515(InterPro)
Clacu07g0778 1583 SMART WD40_4 1411 1445 IPR001680 GO:0005515(InterPro)
Clacu07g0778 1583 SMART WD40_4 646 691 IPR001680 GO:0005515(InterPro)
Clacu07g0778 1583 SMART WD40_4 599 643 IPR001680 GO:0005515(InterPro)
Clacu07g0778 1583 SMART WD40_4 52 91 IPR001680 GO:0005515(InterPro)
Clacu07g0778 1583 Gene3D - 25 304 IPR015943 GO:0005515(InterPro)
Clacu07g0778 1583 ProSiteProfiles Trp-Asp (WD) repeats profile. 606 652 IPR001680 GO:0005515(InterPro)
Clacu07g0778 1583 MobiDBLite consensus disorder prediction 884 899 - -
Clacu07g0778 1583 PANTHER RABCONNECTIN-3B, ISOFORM A 62 1537 IPR049916 GO:0005737(PANTHER)
Clacu07g0778 1583 SUPERFAMILY ARM repeat 1005 1357 IPR016024 -
Clacu07g0778 1583 Pfam WD domain, G-beta repeat 604 643 IPR001680 GO:0005515(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu07g0778 K24738 - - csv:101221785 2622.42
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g47 . Blo03g00223 Bda06g00120 . . Bpe07g00097 . . . . . . . . . . . . . . . . . . Cla07g00745 Cam07g0798 Cec07g0863 Cco07g0835 Clacu07g0778 Cmu07g0786 Cre07g1139 . . Cone6ag0814 Cone9ag0813 . . . Cme07g01612 . . . . . . . Bma12g00068 . . . . . . . . . . . . . . . . . . . . . . . . Csa04g00613 Chy07g01198 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007130 1 2 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 3 3 1 37