Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu07g0779 ATGTCATCAAGTAATGAAGAGAACATTGTAGACATGAGTAACACTCCAACTAATAGCCAAGTTCGTGGTGTTACACGAGGAGTCGGATTACATCGTGTGATTGAGGCAAGTGGAGGACGAATACCTATCTCATGGGATCCTTTCCCGGGGAAACCAGTTGGGAAAGTTGCGAATCTTTTTAGCAGTGAGATTGAGATGGAGAAGGGAATTTGTGGAAGTGAGGATCAGGTTATTGCATCAATGGGAGATTATGATAATGTTGTGAATATTGGAGGAATAAAAGAGGGTGATATTGGTGGAGGGAAGAATAATTGTAATAAAGGGAAAATGGTGATGGGTAAAAGAAGAAGTGCAATGGCTCCAAGGATTGCTTTTCAGACAAGGAGTGCTGAGGATGTTCTTGATGATGGCTATAGATGGAGGAAATATGGTCAGAAGGCAGTCAAACATAGCAATCATCCTAGGAGCTATTATCGGTGTACACATCACACATGCAACGTTAAGAAACAAATTCAAAGGCACGCCAAGGATCCGACCATAGTGGTGACAACATATGAAGGGATTCACAACCATCCATCTGAGAAATTAATGGAGACTCTAAGCCCTCTTCTTAAGCAATTGCAGTTCCTTTCTGGCATTTAG 642 41.74 MSSSNEENIVDMSNTPTNSQVRGVTRGVGLHRVIEASGGRIPISWDPFPGKPVGKVANLFSSEIEMEKGICGSEDQVIASMGDYDNVVNIGGIKEGDIGGGKNNCNKGKMVMGKRRSAMAPRIAFQTRSAEDVLDDGYRWRKYGQKAVKHSNHPRSYYRCTHHTCNVKKQIQRHAKDPTIVVTTYEGIHNHPSEKLMETLSPLLKQLQFLSGI 213
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 19700126 19706876 - ClG42_07g0077900.10 Clacu07g0779 253377
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu07g0779 213 FunFam WRKY transcription factor 57 120 194 - -
Clacu07g0779 213 Pfam WRKY DNA -binding domain 135 192 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Clacu07g0779 213 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 103 192 IPR044810 GO:0003700(InterPro)
Clacu07g0779 213 MobiDBLite consensus disorder prediction 1 22 - -
Clacu07g0779 213 ProSiteProfiles WRKY domain profile. 129 194 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Clacu07g0779 213 Gene3D WRKY domain 119 193 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Clacu07g0779 213 SMART WRKY_cls 134 193 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Clacu07g0779 213 SUPERFAMILY WRKY DNA-binding domain 127 193 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu07g0779 Clacu-Chr7:19700126 Clacu09g0497 Clacu-Chr9:4297644 4.10E-24 dispersed
Clacu07g0779 Clacu-Chr7:19700126 Clacu07g0780 Clacu-Chr7:19791952 2.10E-12 tandem
Clacu04g0696 Clacu-Chr4:20938152 Clacu07g0779 Clacu-Chr7:19700126 8.80E-20 transposed
Clacu07g1556 Clacu-Chr7:30210380 Clacu07g0779 Clacu-Chr7:19700126 2.00E-30 transposed
Clacu09g1446 Clacu-Chr9:20552263 Clacu07g0779 Clacu-Chr7:19700126 2.00E-28 transposed
Clacu11g0932 Clacu-Chr11:9006056 Clacu07g0779 Clacu-Chr7:19700126 3.20E-26 transposed
Clacu05g1519 Clacu-Chr5:18962948 Clacu07g0779 Clacu-Chr7:19700126 1.20E-29 transposed
Clacu05g0146 Clacu-Chr5:1390016 Clacu07g0779 Clacu-Chr7:19700126 9.30E-38 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
48016 PF03106 WRKY 1.10E-24 CL0274 Clacu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu07g0779 - - - 0.0