Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu07g0787 ATGGTACTAGTGTCTCCCAACAATGCAAAGAAACTTTTGTCCAAATTAGCCAAAGGAAATGGTCATGGAGAAGACTCCCCATATTTTGATGGCTGGAAGGCTTACGATTCTGATCCCTTTCATCCAACAATGAATCCCCGCGGAGTTATTCAAATGGGTTTGGCTGAAAATCAGCTTTCTTTTGAATTCGTGGAGAAATGGATGAAAAACAATCCACAGGCTTCAATTTGTACTTTGGAAGGAGTTTATGAGTTTAAGGATGTAGCCATCTTCCAGGATTACCATGGATTGCCAGAGTTCAGAAAAGCTGTGGCGAATTTCATGGGCAAAGTGAGAGGCAATCGAGTTAAATTCGATCCTGACCGAGTTGTGATGAGTGGTGGAGCAACTGGAGCTCATGAAACGGTGGCGTTTTGTTTGGCTGATCCTGGCGAAGCGTTTCTAGTGCCTGTTCCTTATTATCCAGGATTCGACAGAGATTTAAGGTGGCGAACAGGAGTGGAAATAGTTCCAGTAATATGTGAAAGCTCAAACAACTTCAAACTAACAAGAGAAGCCTTAGAAACAGCATACGAGGAAGCTGAAAAATCCAACATAAAAATCAAAGGTTTACTCATAACAAATCCTTCAAATCCACTGGGCACAGTGTACGACAGACAAACACTCGAAACCGCCGTAGCATTTATCAACGAAAAAAACATCCACTTGGTGTGCGACGAAATCTATGCAGCCACTGTCTTTGCAGAGCCTGGCTTCATTAGTATCTCCGAAGTGATTGACAACGACGACATTGACTGCGATAGAAATCTTATCCATGTCGTTTATAGCCTCTCCAAGGACATGGGATTCCCCGGATTTCGTGTCGGCATTATCTACTCCTACAACGATGCTGTCGTCGCCTGTGCTCGTAAGATGTCCAGCTTCGGCCTCGTCTCGTCACAGACACAACATTTGATTGCGTCGATGTTGTCTGATGATGCATTTGTTGACAGCTTTCTTGCTGGGAGCGCTGAGAAACTCGCTGCACGTCATCGTAACTTTACCAAAGGACTTGCTCAGGTAGGAATTGGATATTTGAAAGGGAGTGGGGGATTATTTTTGTGGATGGATTTACGTCATCTTTTGAAAGAGAAGACATTGGAAGCAGAAATGGCATTATGGAGAGTGATTATCAATGAAGTTAAACTGAATGTGTCGCCAGGTTCTTCATTTCATTGCTCAGAGCCAGGATGGTTTAGAGTTTGCTTTGCAAATATGGATGATAACACAATGGACATTTCTATAACTAGAATTAGAAACTTTGTGCTTCAAAACAAGGAGGTAACAACCAAGATTAAGAAACAGAAATTCTGTTGGCGCCAAAGCAGCCTCGAACTTCGATTGTCATCTCGAAGGCTCGAAGACATCATGTCACCACACTCCCCACTGCCTCAATCCCCGATGCTCCGTGCAACCACTTAG 1461 43.46 MVLVSPNNAKKLLSKLAKGNGHGEDSPYFDGWKAYDSDPFHPTMNPRGVIQMGLAENQLSFEFVEKWMKNNPQASICTLEGVYEFKDVAIFQDYHGLPEFRKAVANFMGKVRGNRVKFDPDRVVMSGGATGAHETVAFCLADPGEAFLVPVPYYPGFDRDLRWRTGVEIVPVICESSNNFKLTREALETAYEEAEKSNIKIKGLLITNPSNPLGTVYDRQTLETAVAFINEKNIHLVCDEIYAATVFAEPGFISISEVIDNDDIDCDRNLIHVVYSLSKDMGFPGFRVGIIYSYNDAVVACARKMSSFGLVSSQTQHLIASMLSDDAFVDSFLAGSAEKLAARHRNFTKGLAQVGIGYLKGSGGLFLWMDLRHLLKEKTLEAEMALWRVIINEVKLNVSPGSSFHCSEPGWFRVCFANMDDNTMDISITRIRNFVLQNKEVTTKIKKQKFCWRQSSLELRLSSRRLEDIMSPHSPLPQSPMLRATT 486
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 19975587 19977958 + ClG42_07g0078700.10 Clacu07g0787 253385

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Clacu07g0787 486 PANTHER BIFUNCTIONAL ASPARTATE AMINOTRANSFERASE AND GLUTAMATE/ASPARTATE-PREPHENATE AMINOTRANSFERASE-RELATED 13 438 IPR050478 GO:0006520(PANTHER)|GO:0008483(PANTHER)
Clacu07g0787 486 Gene3D - 72 325 IPR015421 -
Clacu07g0787 486 CDD AAT_like 91 432 - -
Clacu07g0787 486 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 122 142 - -
Clacu07g0787 486 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 234 257 - -
Clacu07g0787 486 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 85 101 - -
Clacu07g0787 486 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 302 325 - -
Clacu07g0787 486 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 198 222 - -
Clacu07g0787 486 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 270 294 - -
Clacu07g0787 486 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 52 78 - -
Clacu07g0787 486 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 144 165 - -
Clacu07g0787 486 Coils Coil 177 197 - -
Clacu07g0787 486 ProSitePatterns Aminotransferases class-I pyridoxal-phosphate attachment site. 276 289 IPR004838 GO:0003824(InterPro)|GO:0009058(InterPro)|GO:0030170(InterPro)
Clacu07g0787 486 Gene3D Aspartate Aminotransferase, domain 1 38 430 IPR015422 -
Clacu07g0787 486 SUPERFAMILY PLP-dependent transferases 22 435 IPR015424 -
Clacu07g0787 486 FunFam 1-aminocyclopropane-1-carboxylate synthase 3 72 325 - -
Clacu07g0787 486 Pfam Aminotransferase class I and II 50 431 IPR004839 GO:0009058(InterPro)|GO:0030170(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu07g0787 K20772 - - csv:101212728 927.546
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu06g0336 Clacu-Chr6:4094956 Clacu07g0787 Clacu-Chr7:19975587 1.60E-180 dispersed
Clacu07g0787 Clacu-Chr7:19975587 Clacu10g0847 Clacu-Chr10:16754027 1.00E-147 dispersed
Clacu07g0787 Clacu-Chr7:19975587 Clacu01g1854 Clacu-Chr1:30677313 8.10E-145 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g40 Blo02g01120 Blo03g00222 Bda06g00119 . . Bpe07g00098 . . . Cmo16g00632 . . . . . Cpe14g00493 . . . . . . . . Cla07g00752 Cam07g0805 Cec07g0867 Cco07g0843 Clacu07g0787 Cmu07g0794 Cre07g1146 . . . Cone9ag0808 . . . Cme07g01616 . . . . . . . Bma12g00069 . . . . Cma16g00582 . . . . . . . . . . . . . . . . . . . Csa04g00609 Chy07g01202 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001626 1 2 3 2 2 2 4 2 2 2 2 2 4 2 2 4 2 3 3 2 2 2 2 2 2 2 2 5 2 2 71