Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu07g0810 ATGGATGACTTTGGTTCATCTTCTAGATTTCATCATCATCAGTACTACAACTTTGAAAGCAGCAGCAGCAGCAACAACAACAATAACAACAGAAGAAGCAGAGATTTTGATGATGATGAACAACAACAACAACAAGATCAAGAAATGGAAGAATGTGGTAACAACAACAACGACAACAACAACAATAATAATTGTTGTGTTTTTGTAGAGAAAGAGCACATGTTTGACAAGGTTGTAACTCCAAGCGATGTGGGAAAATTAAACCGTTTAGTTATCCCAAAACAACACGCTGAAAAATACTTCCCACTTGATGCTTCATCCAACGAAAAAGGTCTTCTCTTAAACTTTGAAGACCGCTGTGGTAAGCTTTGGCGCTTCCGTTACTCTTACTGGACCAGCAGCCAAAGCTATGTGATGACCAAAGGCTGGAGCCGCTTTGTCAAAGACAAAAGACTCGATGCTGGTGATATTGTCTCTTTTCAAAGACCTCTACATCATGCTAAAGATCGTTTTTTTATAGATTGGCGACGCCGTCCACCGCATCCCACCGTCGACATGCCTTTTCCTTTCAACCGCGGTGGCCAATTTCCTCCTCATCACCATTTTCAGCTTCACGGCCAGTGGAATAATAATCCAGTGGCCACACCCTTATCTTTACACAGGGACCACGTCCTCCACTTGCCGCACAATAATAATGTCAGTTTATTTCATAATACCTATAATCATCATCATCATAATCATAATCGTCATCCTGTTCTTGACGGCTCGTCCTACGGTGGGGCATCGGCTTTTTACCATTTGAGATCCCCCTCCACAGCGCCGCAGATAGGGGCAGTGCCGGTTGTAGCAGATGGAAAGGGTGGTGGTAGCAGTGGTGGTGGTGGGAAAACGGCTGCGGCTAAGACGACATTGAGGCTTTTTGGTGTCAACATGGAATGTGCAGTATCTGAAGAGTCTGGTGATGATGAGTGTGACATAGGAACAACTTCGACGACGACAATGTTGTCGTCGTCTCAATTTCATGTTTATAATGGGATGCCGATGCCGATGCCGATGCTGATGCCGATGTCGATGCAGATGCCAATAAATAATAACAACGTATCAACCATGGAGTTCTTCGAGAAAGGGAAGTCATCGATGTCGTCGTCCTTTGATTTTGATACTTGA 1167 44.04 MDDFGSSSRFHHHQYYNFESSSSSNNNNNNRRSRDFDDDEQQQQQDQEMEECGNNNNDNNNNNNCCVFVEKEHMFDKVVTPSDVGKLNRLVIPKQHAEKYFPLDASSNEKGLLLNFEDRCGKLWRFRYSYWTSSQSYVMTKGWSRFVKDKRLDAGDIVSFQRPLHHAKDRFFIDWRRRPPHPTVDMPFPFNRGGQFPPHHHFQLHGQWNNNPVATPLSLHRDHVLHLPHNNNVSLFHNTYNHHHHNHNRHPVLDGSSYGGASAFYHLRSPSTAPQIGAVPVVADGKGGGSSGGGGKTAAAKTTLRLFGVNMECAVSEESGDDECDIGTTSTTTMLSSSQFHVYNGMPMPMPMLMPMSMQMPINNNNVSTMEFFEKGKSSMSSSFDFDT 388
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 20536024 20537190 - ClG42_07g0081000.10 Clacu07g0810 253408
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu07g0810 388 MobiDBLite consensus disorder prediction 15 30 - -
Clacu07g0810 388 ProSiteProfiles B3 DNA-binding domain profile. 75 179 IPR003340 GO:0003677(InterPro)
Clacu07g0810 388 Pfam B3 DNA binding domain 75 178 IPR003340 GO:0003677(InterPro)
Clacu07g0810 388 CDD B3_DNA 73 162 IPR003340 GO:0003677(InterPro)
Clacu07g0810 388 MobiDBLite consensus disorder prediction 15 56 - -
Clacu07g0810 388 SMART B3_2 75 179 IPR003340 GO:0003677(InterPro)
Clacu07g0810 388 SUPERFAMILY DNA-binding pseudobarrel domain 72 177 IPR015300 -
Clacu07g0810 388 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 22 311 IPR044800 GO:0003700(InterPro)
Clacu07g0810 388 FunFam B3 domain-containing protein 68 187 - -
Clacu07g0810 388 Gene3D - 68 183 IPR015300 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu06g0233 Clacu-Chr6:2713577 Clacu07g0810 Clacu-Chr7:20536024 1.70E-51 dispersed
Clacu07g0810 Clacu-Chr7:20536024 Clacu08g0903 Clacu-Chr8:19108621 2.30E-09 dispersed
Clacu10g1846 Clacu-Chr10:32150667 Clacu07g0810 Clacu-Chr7:20536024 1.00E-38 transposed
Clacu01g0123 Clacu-Chr1:1193179 Clacu07g0810 Clacu-Chr7:20536024 3.90E-51 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
48019 PF02362 B3 1.40E-27 CL0405 Clacu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu07g0810 K09287 - csv:101220139 508.449