Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu07g0820 ATGGGGAGATGGCCTATTTCATCCAATGCTTCCATTTTAGATTGCAACAAAGATGTTGATCCTAGTCCCAGTAATGGCTGTTGCATTGCCCCGGCTTGTTCGGTAGAGGGAAGTTATGCGAATGTTGACTATGATGATTACAAAGCCACAATTAGATGTTATTTTGAGAAAATTCTTTGGGTTTTTCTGAAGGAAATTGGTCGTAGAGGACTTATTAGGCCAGTGCCGGCGTTACTAGGTGAAGGGGGATCTTTGGATTTGTTTGAACTCTTCATGGTAGTAAGAGATAAAGGAGGTTATCAAGTGGTTTCAGAAAAGGAACTATGGTCTTCAGTGGTTTTGGAATTAGGTTTGGATCTTGGGCTTTCGGCTTCAGTGAAGTTGATTTATTTGAAGTATTTAAATGACGTAGAGAAATGGCTTATGGTGAGATGTGGAGGCACAAAACTGGAAAATGGGAACTCTGATTATCACTACAGGAAAAGCTTTCCATTTTTGTCAGAACTGGAGGTGAAGATTAAGGGTATGTTATTTGGTGTGCTGAGACAAAAGAGCATATATGATGAATGTTCTAGATTCAAATCTAACAAACCAAATGAGAACGTTAATGTTGCTGCCGCTACAGTGGAGAAGGAAATAAAGAAGAAAGAACACGATCTTCATGGGGATGTTACACCAATTCAACAAAATTGTATCGATACACCTCGGGATAATGGCGAAACCGATCAAATCCATGTTATTGAAGATTGTAGAATTTTGGATGCTGTTAATGTTGAAACTGACATAGACTCTCATGGGAGATATCGAAAATCGTTATTACAAATGCTGAAGTGGGTGAGAAAGACTGCAAAGCATCCTGTAAATCCATTAAATGGTACAATACCAGGGGCATCCAAGTGGAAAGCGTATGCTAGCGATGATGCATTATGGCTTCAAGTTATCAGGGCAAAGAATGCTCTTTTAACTAGGAAGGATGTTGACAAAAATGCTGAGAAACGTCTGTTAATACAGAAGAAAGTAAGGATGCATCCATCCATTTATGAGGATAATATTGATAAACATCACCTTTCTACAGAAAGGATCTGTTGCAGCAAAAGATCTAATGCTTTGGTCGAATCCGTCTTCGTCACGCATAATAATTCATGTCCAATCGTTCAAAGTAATTGTATTAGTAGTCTAACAACAGAAATTGGGAAGGGACTCAAGAAGAATCGAGCACTTTTGAATGGTGATTTTCCATCGGAAACGGAAGACAATCAGCCAAATGAAGATTCTGTTGATAAGCCAGTTCCCGTGGGTGCTTTATTTCAAGCAGTGGTTCCTGAATGGACTGGTAATATTTCCGATAGCGACTCTAAATGGCTAGGGACAAAGTCGTGGCCTTCTCCACACGGAAATAGTAATTCCGTAAGTGATAGAAATCCCATTGGTAGAGGGAGACTGGATTCATGTAGATGTCAATTTCCAGGTTCTGTTGAATGTTTTAGATTTCACATTGCGGAAGCGAGGATGAGATTAAAGCTTGAACTTGGTTTGACATTCTACGATTGGAGATTTCATCATATGGGGGAGGAAATATCTCTGCAGTGGACTGCCGAAGAGGAAAAGAGATTTAAGGAGTTGGCAACATCAAGTTTTAACAATCAGAGCCAGTGCTTTTGGAGTTATTCCTTGAAGTGGTTCCCATTGAAATCAAAGAAAAATTTGATAAGCTATTACTTCAATGTGTTTCTTTTACGGCAGAGAAGCTATCAGAATCGTGTGACTCCAAATAGCATTGATAGCGATGATGAAGATGTAGAGTTTGGTTGCATCAGTGGTGACTTTGGGGCTAAGGCAATGGAAATTTTAGGCTCAAAGTCTGTAGAATGTTCTGAAAATAGACAATTCACAGATGTGGAGTAG 1905 39.42 MGRWPISSNASILDCNKDVDPSPSNGCCIAPACSVEGSYANVDYDDYKATIRCYFEKILWVFLKEIGRRGLIRPVPALLGEGGSLDLFELFMVVRDKGGYQVVSEKELWSSVVLELGLDLGLSASVKLIYLKYLNDVEKWLMVRCGGTKLENGNSDYHYRKSFPFLSELEVKIKGMLFGVLRQKSIYDECSRFKSNKPNENVNVAAATVEKEIKKKEHDLHGDVTPIQQNCIDTPRDNGETDQIHVIEDCRILDAVNVETDIDSHGRYRKSLLQMLKWVRKTAKHPVNPLNGTIPGASKWKAYASDDALWLQVIRAKNALLTRKDVDKNAEKRLLIQKKVRMHPSIYEDNIDKHHLSTERICCSKRSNALVESVFVTHNNSCPIVQSNCISSLTTEIGKGLKKNRALLNGDFPSETEDNQPNEDSVDKPVPVGALFQAVVPEWTGNISDSDSKWLGTKSWPSPHGNSNSVSDRNPIGRGRLDSCRCQFPGSVECFRFHIAEARMRLKLELGLTFYDWRFHHMGEEISLQWTAEEEKRFKELATSSFNNQSQCFWSYSLKWFPLKSKKNLISYYFNVFLLRQRSYQNRVTPNSIDSDDEDVEFGCISGDFGAKAMEILGSKSVECSENRQFTDVE 634
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 20871049 20875748 - ClG42_07g0082000.10 Clacu07g0820 253418

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Clacu07g0820 634 ProSiteProfiles ARID domain profile. 49 142 IPR001606 GO:0003677(InterPro)
Clacu07g0820 634 Gene3D - 41 146 IPR036431 GO:0003677(InterPro)
Clacu07g0820 634 CDD ARID 55 138 - -
Clacu07g0820 634 Coils Coil 199 219 - -
Clacu07g0820 634 SMART ARID_2 38 138 - -
Clacu07g0820 634 MobiDBLite consensus disorder prediction 454 474 - -
Clacu07g0820 634 SUPERFAMILY ARID-like 52 142 IPR036431 GO:0003677(InterPro)
Clacu07g0820 634 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN 2 51 627 - -
Clacu07g0820 634 Pfam ARID/BRIGHT DNA binding domain 68 135 IPR001606 GO:0003677(InterPro)
Clacu07g0820 634 SMART bright_3 49 143 IPR001606 GO:0003677(InterPro)
Clacu07g0820 634 MobiDBLite consensus disorder prediction 408 428 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu07g0820 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu06g0357 Clacu-Chr6:4290619 Clacu07g0820 Clacu-Chr7:20871049 1.10E-64 dispersed
Clacu06g1685 Clacu-Chr6:27568613 Clacu07g0820 Clacu-Chr7:20871049 6.80E-23 dispersed
Clacu05g0171 Clacu-Chr5:1576656 Clacu07g0820 Clacu-Chr7:20871049 1.00E-64 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g13 . . . . . . Bma07g01663 . . Cmo16g00656 . . . . . Cpe14g00511 . . . . . . . . Cla07g00785 Cam07g0845 Cec07g0897 Cco07g0880 Clacu07g0820 Cmu07g0824 Cre07g1181 . . Cone6ag0789 Cone9ag0791 . . . Cme07g01639 . . . Bda09g00033 . . . . . . . . Cma16g00601 . . . . . . . . . . . . . . . . . . . . Chy07g01224 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008781 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 2 1 1 1 1 1 1 2 1 1 2 1 1 34
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
48020 PF01388 ARID 1.20E-08 CL0123 Clacu TR