Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu07g0830 ATGAGAACACTGTGTGACGCTTGTGAAAGCGCTGCCGCTATCGTCTTTTGTGCTGCTGACGAGGCTGCCCTTTGCCGCTCTTGTGACGAGAAGGTCCATATGTGCAATAAACTCGCAAGTCGACATGTAAGAGTTGGCCTTGCAAGTCCCAGTGATGTTCCCCGTTGTGATATATGCGAGAATGCACCTGCTTTCTTTTACTGTGAGATAGATGGAAGTTCCCTTTGTTTGCAATGTGACATGATCGTTCATGTTGGAGGGAAAAGGACACATAAGAGATACCTTTTGCTACGGCAGAGGGTCGAGTTTCCAGGAGACAAACCTATAAATCTTGATGATCCGTCTCCACATTCCAAGGTTCCCAATGAGATTGGTAAAGTACATAATCAGCCACCACCGCACAAAGTGACAGTAGAAGACAACCAGCAAAATCATCATCGGCTATCACCTGTTCAAGAGGCTAACGATGATGGTCATGCCGAGACTGATACAAAAATGATCGATTTGAATATGAAGCCTCAAAGGGTCCATGGGCAGGCTGCTAATAATCAGGATCTATGA 561 45.81 MRTLCDACESAAAIVFCAADEAALCRSCDEKVHMCNKLASRHVRVGLASPSDVPRCDICENAPAFFYCEIDGSSLCLQCDMIVHVGGKRTHKRYLLLRQRVEFPGDKPINLDDPSPHSKVPNEIGKVHNQPPPHKVTVEDNQQNHHRLSPVQEANDDGHAETDTKMIDLNMKPQRVHGQAANNQDL 186
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 21083117 21085597 + ClG42_07g0083000.10 Clacu07g0830 253428
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu07g0830 186 MobiDBLite consensus disorder prediction 150 170 - -
Clacu07g0830 186 Pfam B-box zinc finger 3 41 IPR000315 GO:0008270(InterPro)
Clacu07g0830 186 Pfam B-box zinc finger 52 92 IPR000315 GO:0008270(InterPro)
Clacu07g0830 186 SMART bboxneu5 1 47 IPR000315 GO:0008270(InterPro)
Clacu07g0830 186 SMART bboxneu5 51 96 IPR000315 GO:0008270(InterPro)
Clacu07g0830 186 FunFam B-box zinc finger protein 19 2 92 - -
Clacu07g0830 186 CDD Bbox1_BBX-like 4 47 IPR049808 -
Clacu07g0830 186 SUPERFAMILY B-box zinc-binding domain 48 88 - -
Clacu07g0830 186 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270(InterPro)
Clacu07g0830 186 PANTHER B-BOX ZINC FINGER PROTEIN 22 1 172 IPR051979 GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0009640(PANTHER)
Clacu07g0830 186 Gene3D Classic Zinc Finger 2 96 - -
Clacu07g0830 186 ProSiteProfiles Zinc finger B-box type profile. 51 96 IPR000315 GO:0008270(InterPro)
Clacu07g0830 186 MobiDBLite consensus disorder prediction 106 186 - -
Clacu07g0830 186 MobiDBLite consensus disorder prediction 135 149 - -
Clacu07g0830 186 CDD Bbox1_BBX-like 56 96 IPR049808 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu07g0830 Clacu-Chr7:21083117 Clacu07g1009 Clacu-Chr7:24510854 2.20E-21 dispersed
Clacu07g0830 Clacu-Chr7:21083117 Clacu01g2073 Clacu-Chr1:32478251 5.10E-55 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
48021 PF00643 zf-B_box 2.40E-06 No_clan Clacu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu07g0830 - - - 0.0