Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu07g0879 ATGATGACCACGACGATGAGGAAGAAATCTGCTAGTTTTCTCTTCAGATACTCTCGATTTTTTCACTCGGAACGGCTTTTGAATCTTAATCGCAATAATTCGTTTCTCCGTTCAGGAACTTCCTTGTGCATCCCAATTTCACAATATTTTGGTTCAATTCCGGGATGCAGAAAAGCTTTTCAGGATTCTGCGTTCAATTATTTTAGAATGCCTTGCGGATTTCAGTTCAGACGCATTACTTCATTATCGTCAGTGGTTCAGAGAAATTCTTCATTTTCGAGGTTAAATTCTGATGATATCGACTTTTTCCGGAGTATTTTGGGGGAGAAAAATGTAGTTCAGGATGAGGATAGGCTATTGGATGCAAATACAGATTGGTTGCGGAAGTTCAGAGGGTCGAGTAAGCTTTTACTACAACCTAGGAGCACAGAAGAGGTCTCTCAGATACTTAAATATTGCAACTCCAGAGACTTGCCTGTTGTACCCCAAGGTGGAAATACCGGTCTTGTTGGCGGAAGTGTTCCAGTTTTTGATGAAGTAATAATCAACCTTGGATTAATGAATGGCATCATATCTTTTGACAAGGTTAGCGGCATACTTGTTTGTGAATCCGGCGGCATCTTAGAAAACTTGTCCTCTTTTCTGGACAACCAAGGATTTATAATGCCACTGGACTTAGGTGCTAAAGGAAGCTGCCAGATTGGTGGAAATGTTTCTACTAATGCAGGTGGTTTGCGCCTTGTTCGTTATGGATCTCTTCATGGCAGTGTACTTGGACTTGAAGTTGTTTTAGCAGATGGTAGTGTGCTTGACATGCTGGGAACTTTAAGAAAAGATAATACTGGATATGATTTAAAGCATTTGTTTATAGGCAGTGAAGGTACCTTGGGCATTATAACCAAGATTTCAATTCTTACCCCACCTAAACTACCTGCTACCAATGTAGCATTTCTTGGATGTAAAGATTACTCAAGCTGTCAGAAACTTCTAGTGGATGCAAAGAGGAAACTTGGGGAGATTCTTTCTGCATTTGAATTCCTGGATAACATGTCGATGGATTTGGTTCTCAATCATTTAGAAGGTACTCGTAATCCATTGCCTCCGACAATGCACAACTTTTATGTTCTGATCGAGACAACAGGCACTGATGAATCATATGACAAGGAAAAGCTTGAAGCATTTCTACTACGTTCGATGGAAGGTGGTTTAATCTCTGATGGTGTTCTTGCACAAGACATCAACCAAATATCCTCTTTTTGGCAGATCCGTGAGGGCATTCCAGAGGCATTGATGAAAGCAGGAGCTGTTTACAAGTATGATTTGTCATTACCTGTTGAGAAGATGTACGAACTTGTCGAAGCAATGCGAACAAGACTTGGCAACTCCGCTAAAGTAATTGGTTATGGCCACCTTGGAGATGGTAATTTACATCTGAATATTTCAACTCCGCAATATGATGATGCGGTTTTAGCACAAATCGAACCCTTTGTCTATGAGTGGACTTCTAACCATCGTGGAAGCATCAGTGCAGAGCATGGCTTGGGATTGATGAAAGCCAACAAGATTTTTTACAGCAAGTCACCTGAAATTGTACAAATCATGGGTTCTATTAAGAAATTGCTGGACCCTCGTGGCATACTCAACCCCTATAAAGTTCTGCCGCACTCCCTTGGTTCCTAG 1680 41.01 MMTTTMRKKSASFLFRYSRFFHSERLLNLNRNNSFLRSGTSLCIPISQYFGSIPGCRKAFQDSAFNYFRMPCGFQFRRITSLSSVVQRNSSFSRLNSDDIDFFRSILGEKNVVQDEDRLLDANTDWLRKFRGSSKLLLQPRSTEEVSQILKYCNSRDLPVVPQGGNTGLVGGSVPVFDEVIINLGLMNGIISFDKVSGILVCESGGILENLSSFLDNQGFIMPLDLGAKGSCQIGGNVSTNAGGLRLVRYGSLHGSVLGLEVVLADGSVLDMLGTLRKDNTGYDLKHLFIGSEGTLGIITKISILTPPKLPATNVAFLGCKDYSSCQKLLVDAKRKLGEILSAFEFLDNMSMDLVLNHLEGTRNPLPPTMHNFYVLIETTGTDESYDKEKLEAFLLRSMEGGLISDGVLAQDINQISSFWQIREGIPEALMKAGAVYKYDLSLPVEKMYELVEAMRTRLGNSAKVIGYGHLGDGNLHLNISTPQYDDAVLAQIEPFVYEWTSNHRGSISAEHGLGLMKANKIFYSKSPEIVQIMGSIKKLLDPRGILNPYKVLPHSLGS 559
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 21928244 21940936 - ClG42_07g0087900.10 Clacu07g0879 253477

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Clacu07g0879 559 Gene3D - 311 432 - -
Clacu07g0879 559 FunFam D-2-hydroxyglutarate dehydrogenase mitochondrial 434 512 - -
Clacu07g0879 559 Pfam FAD linked oxidases, C-terminal domain 312 552 IPR004113 GO:0003824(InterPro)|GO:0050660(InterPro)
Clacu07g0879 559 ProSiteProfiles PCMH-type FAD-binding domain profile. 130 309 IPR016166 GO:0071949(InterPro)
Clacu07g0879 559 FunFam D-lactate dehydrogenase mitochondrial 513 553 - -
Clacu07g0879 559 SUPERFAMILY FAD-linked oxidases, C-terminal domain 283 555 IPR016164 GO:0003824(InterPro)|GO:0050660(InterPro)
Clacu07g0879 559 FunFam D-2-hydroxyglutarate dehydrogenase, mitochondrial 188 308 - -
Clacu07g0879 559 Pfam FAD binding domain 136 271 IPR006094 GO:0050660(InterPro)
Clacu07g0879 559 Gene3D - 189 309 IPR016169 -
Clacu07g0879 559 PANTHER D-2-HYDROXYGLUTARATE DEHYDROGENASE, MITOCHONDRIAL 75 557 IPR051264 GO:0005739(PANTHER)
Clacu07g0879 559 Gene3D - 434 512 - -
Clacu07g0879 559 Gene3D - 84 185 IPR016167 -
Clacu07g0879 559 FunFam D-2-hydroxyglutarate dehydrogenase mitochondrial 310 432 - -
Clacu07g0879 559 FunFam D-2-hydroxyglutarate dehydrogenase, mitochondrial 86 185 - -
Clacu07g0879 559 Gene3D - 513 553 IPR016171 -
Clacu07g0879 559 SUPERFAMILY FAD-binding/transporter-associated domain-like 98 308 IPR036318 GO:0050660(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu07g0879 K18204 - - csv:101216583 1026.16
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu07g0879 Clacu-Chr7:21928244 Clacu10g1775 Clacu-Chr10:31360157 6.00E-43 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1051 . . . . . Bpe13g00429 . . . Cmo16g00694 . . . . . . . . . . . . . . . . . . . . . . Cone12ag0783 . . . . Chy07g01262 . . . Bda11g01848 . . . . Bma06g00108 . . . Cma16g00636 . . . . Cpe14g00543 . . . . . . . Cla07g00835 Cam07g0904 Cec07g0957 Cco07g0947 Clacu07g0879 Cmu07g0879 Cre07g1240 Lsi07g00234 Csa04g00541 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009582 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 2 1 33