Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu07g0881 ATGCTGCTTCAGACGATCTTTCTTCACCAAAATTGTTCCAATTGGCAGCATTTTATGAGTTTGAAAATGAAATCAAGTAACGACCCTGAGAATCAGCTCATAATCGAAGGAAATATCTCTCAGAATATGAAGATTGATCCGGAGAGAGCTCGGTTTCCATGTTGCATTGTGTGGACACCTCTTCCTGTTATTTCGTGGCTCATTCCTTTCATTGGTCACATTGGTATTGGCAGAGAGGATGGAGTAATCTTGGACTTTGCTGGCCCTAATTTTGTGTGTGTTGACAACTTCACATTTGGAGCAGTCGCACGGTATCTTCAAATCAACAGAGATAAGTGTTGCATTTCCACTCATAGAAGTGAAGAAGAATTGAGGGAAGTTGATCATAGCACAGAAATTTCAACATGGGATGATGCATTGCGGAGGAGCACTCAAGAGTTTCAACATCGATCCTACAATCTCTTGACTTGCAATTGTCATTCCTTTGTGGCTAATAATCTGAACAGACTTGAGTTTCGAACAGGTGGATGGAATGTGGTGAACCTTGCAGCTCTGATCTTTCTCAAGGGTCGGTGGGTCAGTAAAGGAGCTTTTATCCGGACGTTCTTACCATTTGTTGTGGTATTCAGTATTGGACTCGCACTGGGGGGTACTACGTTCCTTACCTTCTTGGCATTCTTCACTTTCTTCCTGTTCATATGGCGTATTATATACGTAGAAGGGAGCAAAATACTTAATGCAACTCACGACCGTGATTACTTGCAGCCTCTTTAG 774 42.25 MLLQTIFLHQNCSNWQHFMSLKMKSSNDPENQLIIEGNISQNMKIDPERARFPCCIVWTPLPVISWLIPFIGHIGIGREDGVILDFAGPNFVCVDNFTFGAVARYLQINRDKCCISTHRSEEELREVDHSTEISTWDDALRRSTQEFQHRSYNLLTCNCHSFVANNLNRLEFRTGGWNVVNLAALIFLKGRWVSKGAFIRTFLPFVVVFSIGLALGGTTFLTFLAFFTFFLFIWRIIYVEGSKILNATHDRDYLQPL 257
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 21965110 21966802 - ClG42_07g0088100.10 Clacu07g0881 253479

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Clacu07g0881 257 Pfam Domain of unknown function (DUF778) 46 190 IPR008496 -
Clacu07g0881 257 PANTHER UNCHARACTERIZED 25 216 IPR008496 GO:0005783(PANTHER)|GO:0005794(PANTHER)|GO:0009723(PANTHER)|GO:0010104(PANTHER)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu07g0881 K20726 - - csv:101222733 394.815
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu05g1940 Clacu-Chr5:28594934 Clacu07g0881 Clacu-Chr7:21965110 1.40E-56 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1059 . . . . . . . . . Cmo16g00696 . . . . . . . . . . . . . . . . . . . . . Cone8ag0831 . . . . . Chy07g01264 . . . . . . . . . . . . Cma16g00639 . . . . Cpe14g00545 . . . . . . . Cla07g00837 Cam07g0906 Cec07g0959 Cco07g0949 Clacu07g0881 Cmu07g0881 Cre07g1242 Lsi07g00232 Csa04g00538 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011038 1 2 0 0 1 1 2 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 31