Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu07g0884 ATGGCCGGTTTTTTCCCACTAGGCGGCGCCGGAAGCAGCGGAAGAGGTTCCAATTATCATCTTCCTACAACTACTACTAGTATCACCACCAGCGGCGGCGAAATAATTCATCCCAACGAGGGGTTATTTTGGTACAAGAATTATGAGAGACTGGAAACGTGGGAAGAACAACAGCAACCGCAGGAACAAGGGGGAGAAGGATTTGTTTACTCGGGCGATGAATCGCCGGCTAGATCGTCGTTGGTGATGGTGAGATCGGGAAGAGGCGGCGGTGGAGGGCATGTAACGAGCTGCCAAGACTGTGGAAATCAAGCGAAAAAAGATTGCGTTTACATGCGATGTAGAACTTGTTGTAAAAGCCGTGGGTTTGAGTGTGAAACTCACGTTAAAAGCACTTGGGTTCCCGCCTCCAAACGCCGTGACCGCCACCTCCGTTGCCTCGCCTCTAACCCCAAACGCCCTAAAGACAACCCCGCTGCTTCTTCAGGGTTGGAAATGGGGAATTTTCCGGTGGAAGTAAACTCTACGGCGGTGTTTCGGTGCGTACGAATGACAACGTTGGACGAAACCAACGACCAATATGCGTATCAAACAGCTGTCAATATCGGAGGCCATATCTTCAAAGGCATTCTTTACGACCACGGCCCTGAACAACAACTACAACAACAGCCACCCACCTCCGCCTCCCCTGACGCCTCCGCCCTCCTCATCACCACCGCTGAATCCGCCGCATTGCTCGATCCACCTCCGCAGTACCCCACTCCTCTTTCCACCTACATCGCCACCGGTACGCAATTTTTTCTTCCCCCAACATCTTAA 819 52.26 MAGFFPLGGAGSSGRGSNYHLPTTTTSITTSGGEIIHPNEGLFWYKNYERLETWEEQQQPQEQGGEGFVYSGDESPARSSLVMVRSGRGGGGGHVTSCQDCGNQAKKDCVYMRCRTCCKSRGFECETHVKSTWVPASKRRDRHLRCLASNPKRPKDNPAASSGLEMGNFPVEVNSTAVFRCVRMTTLDETNDQYAYQTAVNIGGHIFKGILYDHGPEQQLQQQPPTSASPDASALLITTAESAALLDPPPQYPTPLSTYIATGTQFFLPPTS 272
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 22016079 22016986 - ClG42_07g0088400.10 Clacu07g0884 253482
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu07g0884 272 MobiDBLite consensus disorder prediction 147 167 - -
Clacu07g0884 272 Pfam Domain of unknown function (DUF702) 96 217 - -
Clacu07g0884 272 NCBIfam putative zinc finger domain, LRP1 type 97 139 IPR006510 -
Clacu07g0884 272 PANTHER PROTEIN LATERAL ROOT PRIMORDIUM 1 1 266 IPR007818 GO:0003677(PANTHER)|GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0006355(InterPro)|GO:0045893(PANTHER)
Clacu07g0884 272 NCBIfam LRP1 C-terminal domain 169 216 IPR006511 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu05g2030 Clacu-Chr5:29263007 Clacu07g0884 Clacu-Chr7:22016079 1.10E-42 dispersed
Clacu07g0884 Clacu-Chr7:22016079 Clacu09g1418 Clacu-Chr9:19681662 8.50E-43 dispersed
Clacu01g2063 Clacu-Chr1:32405716 Clacu07g0884 Clacu-Chr7:22016079 2.10E-51 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
48025 PF05142 DUF702 1.00E-50 No_clan Clacu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu07g0884 K27807 - csv:101216097 383.259