Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu07g0899 ATGAACCACCAAGAAGCTGAAGAGCATGAAGCAGTACAAATCTCTCAGTTGTACACTGAATTATACATCCAAATGGTACCCCAACAAGGTAATTTGGGTGAGTCTAAACCGAGACGACGTCGTAAGAAGAACAGAGGATCGGAAGCAGAGGCGGCGGCAGGGGGGAAAAAGAGGAAACTGACGGCGGCGCAAGTTCATCTTTTGGAGTCGAATTTCGGGAGTGAACATAAATTGGAATCGGAAAGAAAGGACCGTTTAGCGTCGGAGTTGGGGCTGGATCCTCGGCAGGTGGCTGTCTGGTTTCAGAACCGCCGTGCACGGTGGAAGAACAAGAAACTTGAGGAGGAGTATTCTAACTTGAAGAAGCTTCATGAATCCGTCGTCGTTGAAAAATGTCGTCTAGAAACTGAGATATTGAAGCTGAAAGAACAACTATCAGAAGTAGAGAAAGAGAAAGAGAGGGTAATAATGGGAGAAGGGGGCGATGGGGGTTTAAGCAGCAGCAGCCCAAGCCCATCAATGTCATTGTCGATGGATGCGATGGACCCCACATGCCTTGGGGAAATTCCACCATCATATGAAGATGTGTTTTATTACATGCCTGAAAACTATTGTATTTATGGCATGGAATGGCCTAATCCCTACATTTGA 651 46.39 MNHQEAEEHEAVQISQLYTELYIQMVPQQGNLGESKPRRRRKKNRGSEAEAAAGGKKRKLTAAQVHLLESNFGSEHKLESERKDRLASELGLDPRQVAVWFQNRRARWKNKKLEEEYSNLKKLHESVVVEKCRLETEILKLKEQLSEVEKEKERVIMGEGGDGGLSSSSPSPSMSLSMDAMDPTCLGEIPPSYEDVFYYMPENYCIYGMEWPNPYI 216
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 22560695 22563390 + ClG42_07g0089900.10 Clacu07g0899 253497
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu07g0899 216 PRINTS Lambda-repressor HTH signature 82 91 IPR000047 GO:0003677(InterPro)
Clacu07g0899 216 PRINTS Lambda-repressor HTH signature 91 107 IPR000047 GO:0003677(InterPro)
Clacu07g0899 216 CDD homeodomain 56 112 IPR001356 GO:0003677(InterPro)
Clacu07g0899 216 SUPERFAMILY Homeodomain-like 56 119 IPR009057 -
Clacu07g0899 216 FunFam homeobox-leucine zipper protein ATHB-40 50 119 - -
Clacu07g0899 216 MobiDBLite consensus disorder prediction 28 60 - -
Clacu07g0899 216 ProSitePatterns 'Homeobox' domain signature. 86 109 IPR017970 GO:0000981(InterPro)|GO:0006355(InterPro)
Clacu07g0899 216 Coils Coil 134 154 - -
Clacu07g0899 216 SMART HOX_1 54 115 IPR001356 GO:0003677(InterPro)
Clacu07g0899 216 Coils Coil 103 130 - -
Clacu07g0899 216 ProSiteProfiles 'Homeobox' domain profile. 51 111 IPR001356 GO:0003677(InterPro)
Clacu07g0899 216 Pfam Homeodomain 57 110 IPR001356 GO:0003677(InterPro)
Clacu07g0899 216 Gene3D - 47 119 - -
Clacu07g0899 216 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 39 159 IPR045224 GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0043565(PANTHER)|GO:0045893(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu01g1998 Clacu-Chr1:31921185 Clacu07g0899 Clacu-Chr7:22560695 4.90E-41 dispersed
Clacu07g0899 Clacu-Chr7:22560695 Clacu10g1929 Clacu-Chr10:32910367 3.10E-19 dispersed
Clacu07g0899 Clacu-Chr7:22560695 Clacu01g1513 Clacu-Chr1:27228531 1.60E-20 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
48028 PF00046 Homeodomain 4.70E-17 CL0123 Clacu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu07g0899 K09338 - csv:101221080 327.02