Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu07g0903 ATGCCAACGGACTTAGAAAATTCCTCCAACGCTTCTGGCGAAGTCAGTATCTCCTCCACTGGCAATCAGCCTCCGCCGCCCAAATCCGCCGTGAAAAAAAAGCGTAATTTACCCGGAATGCCAGATCCGGATGCAGAGGTAATTGCTCTGTCTCCGAAGACCCTTTTGGCTACAAATCGATTTGTGTGTGAAATTTGCAACAAAGGGTTTCAAAGAGATCAGAATCTGCAACTTCACCGGCGAGGTCACAATCTTCCATGGAAACTCCGGCAACGGACTAGCAAAGAGGTGAAAAAGAAAGTCTATGTCTGCCCGGAGCCGTCGTGCGTCCACCACCATCCGTCGAGAGCTCTCGGCGATCTGACCGGAATAAAGAAGCACTTCTGCCGGAAGCACGGCGAGAAGAAGTGGAAGTGCGAAAAGTGCTCTAAGAAATATGCAGTCAAGTCCGATTGGAAGGCTCATTCTAAGATTTGTGGCACCAGAGAGTACAAATGCGACTGTGAGACTGTGTTTTCGAGAAGAGATAGTTTCATCACTCACAGAGCCTTCTGTGATGCGTTGACGAAGGAGGTTGCTGGAAGTTTGTCTCCAGCGGCGGCGGAGAATCCTAATTTGGAGTCCGATCCTCACGTAAAGCCATCGGGTAGTTCGTCTCCGCCGCCTTCGGCCCCTCCTCTTTCCGCCGCGACGGGTGCCGCACCAATAGCTCCTCCTCCATCCACTGACGCGATGTCATCAATCGCGTCCATTGAGAATAAAGCCTCACCGGAAAATCCTCCGCCGCAGCTAGGAGAGGCACCGGGCAGAACTACCCTAACTGGAAACTCCGGCAGCAGCAGCAACGCTAGCGTATTGGCTAGCTTGTTTGCTTCCTCCGCCGCATCGCTGAGCTTACAGCCGCCGCAGCCACCTGCATTTTGCGACTTATTACGAGCCATGGCGCGGCCTGATCGGGCGGCTGAAATTGCACCGCCGTTGGTTTTTGAACCTCTTTCGCTGTGCCTATCGACTGACACCGAATCGTCACTTTTTCGAGCTGGAATCCAAGAGTGCCGCCCATATGTGCCACCGACACCGCCGTCCATGTCCGCCACCGGACTCCTACAGAAGGCGGCTCAAATGGGCGCTGCAGCGGCGGGCGCATCAGTGTTTCGTGGACTTGGTTTATCGTCTTCCTCTTCTTCTGCACAACAGGGGAGTTTATAA 1209 53.68 MPTDLENSSNASGEVSISSTGNQPPPPKSAVKKKRNLPGMPDPDAEVIALSPKTLLATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLRQRTSKEVKKKVYVCPEPSCVHHHPSRALGDLTGIKKHFCRKHGEKKWKCEKCSKKYAVKSDWKAHSKICGTREYKCDCETVFSRRDSFITHRAFCDALTKEVAGSLSPAAAENPNLESDPHVKPSGSSSPPPSAPPLSAATGAAPIAPPPSTDAMSSIASIENKASPENPPPQLGEAPGRTTLTGNSGSSSNASVLASLFASSAASLSLQPPQPPAFCDLLRAMARPDRAAEIAPPLVFEPLSLCLSTDTESSLFRAGIQECRPYVPPTPPSMSATGLLQKAAQMGAAAAGASVFRGLGLSSSSSSAQQGSL 402
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 22721403 22724686 - ClG42_07g0090300.10 Clacu07g0903 253501
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu07g0903 402 MobiDBLite consensus disorder prediction 1 26 - -
Clacu07g0903 402 Gene3D Classic Zinc Finger 41 108 - -
Clacu07g0903 402 FunFam protein indeterminate-domain 12-like 40 108 - -
Clacu07g0903 402 Gene3D Classic Zinc Finger 130 191 - -
Clacu07g0903 402 Pfam BIRD-IDD transcription factor, third C2HC zinc finger 136 160 - -
Clacu07g0903 402 Pfam BIRD-IDD transcription factor, fourth C2HC zinc finger 163 196 - -
Clacu07g0903 402 MobiDBLite consensus disorder prediction 1 44 - -
Clacu07g0903 402 ProSiteProfiles Zinc finger C2H2 type domain profile. 61 83 IPR013087 -
Clacu07g0903 402 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 19 391 IPR031140 GO:0003700(PANTHER)|GO:0005634(PANTHER)
Clacu07g0903 402 FunFam protein indeterminate-domain 5, chloroplastic-like 115 194 - -
Clacu07g0903 402 Pfam BIRD-IDD transcription factor, second C2H2 zinc finger 98 132 - -
Clacu07g0903 402 SMART c2h2final6 61 83 IPR013087 -
Clacu07g0903 402 SMART c2h2final6 137 157 IPR013087 -
Clacu07g0903 402 SUPERFAMILY beta-beta-alpha zinc fingers 60 157 IPR036236 -
Clacu07g0903 402 Pfam Zinc finger, C2H2 type 61 83 IPR013087 -
Clacu07g0903 402 MobiDBLite consensus disorder prediction 199 279 - -
Clacu07g0903 402 ProSitePatterns Zinc finger C2H2 type domain signature. 63 83 IPR013087 -
Clacu07g0903 402 MobiDBLite consensus disorder prediction 243 257 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu07g0903 Clacu-Chr7:22721403 Clacu08g1684 Clacu-Chr8:26474575 1.40E-89 dispersed
Clacu09g0608 Clacu-Chr9:5230313 Clacu07g0903 Clacu-Chr7:22721403 2.00E-82 transposed
Clacu01g2001 Clacu-Chr1:31947302 Clacu07g0903 Clacu-Chr7:22721403 2.00E-130 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
48031 PF00096 zf-C2H2 0.0039 CL0361 Clacu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu07g0903 K25869 - csv:101215476 607.831