Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu07g0905 ATGTCCTTCTCCATCTCCACCCGCCACATCCGTCGCCTATCTACGGCAGCCACCGCCGCCGCCAACGCAACGGCAACGACTTCCTCTTCAATATCCATTTCAAAAGCGAAATCTAAATTAAGAACCGAGTATGATCCAGATAAAGCCCTCGACATTTACTCTTCTGTTTCCAGTCACTACACCTCCCCTGTCTCTTCTCGTTACGCTCAGGAGATAACCATCCGGCGCCTTGCAAAGTCTCGTCGGTTCGACGACATCGAATCCCTAATCGAGTCCCATAAAAACGACCCGAAGATCACTCAGGAGCCATTTTTGTCCACCCTGATTCGATCCTATGGTCGAGCTGGTATGCTCGAGCACGCTATGAGGACTTATAATCAGATGGGGGATTTAGGTACTCCTCGATCCGCGATTTCCTTTAATGCCCTGTTATCTGCTTGTAACCTTTCGAAGCAATTCGACAAGGTTCCTCAACTGTTCGACGAAATTCCCAAGAAATATAATTTCTCTCCCAATAAGATCTCGTACGGGATCCTGGTTAAATCCTATTGCGACGCCGGTTCCCCCGAGAAGGCCATGCAGATTGTTAGACAGATGGAGGAAAATGGCGTGGAGGTAACTGCTGTGACATTCACAACCATTTTAGATGCTCTGTACAAGAAGGGTGAGAGCGAAGAGGCAGAGAAAATCTGGGAGCAGATGATATCAAAAGGGTGTGAACTTGATGTGGGAGCCTATAATGTTAGACTGATGCACAAGCATGGTGGCAAGCCTGAGCATGTGCAAGCTTTAATCGAGGAAATGGCTAATTCAGGTTTGAAACCAGACACAATTAGTTATAATTACTTGATGACTTGTTATTGTAAGAATGGGATGATTGATGAAGCAAAGAAGGTGTATGATGATATGGAGGCAAATGGGTGTAAAATGAATGCTGCAACTTTTAGGACATTTATATATTATCTCTGTAGAAATGGGGAGTATGAGAAAGGGTATAAGGTTTTCAAGGAGAGTGTGAAGATGCATAAGATTCCTGATTTTAACACACTGAAGTATTTGGTGGAGGGGCTGGTGGAGAAGAAGAAGATGAAAGAAGCTAAGGGTTTAATAAGGACTATAAGGAAGAAGTTCCCTCCTGACTCTTTGAAGGCTTGGAGAAAAGTTGAGGAGAGTCTTGGTTTGGCTTCTGCTGCTGATGATGCTTCTTCTAAGGATGATGAAACTAAAACATGA 1233 44.44 MSFSISTRHIRRLSTAATAAANATATTSSSISISKAKSKLRTEYDPDKALDIYSSVSSHYTSPVSSRYAQEITIRRLAKSRRFDDIESLIESHKNDPKITQEPFLSTLIRSYGRAGMLEHAMRTYNQMGDLGTPRSAISFNALLSACNLSKQFDKVPQLFDEIPKKYNFSPNKISYGILVKSYCDAGSPEKAMQIVRQMEENGVEVTAVTFTTILDALYKKGESEEAEKIWEQMISKGCELDVGAYNVRLMHKHGGKPEHVQALIEEMANSGLKPDTISYNYLMTCYCKNGMIDEAKKVYDDMEANGCKMNAATFRTFIYYLCRNGEYEKGYKVFKESVKMHKIPDFNTLKYLVEGLVEKKKMKEAKGLIRTIRKKFPPDSLKAWRKVEESLGLASAADDASSKDDETKT 410
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 22771661 22772893 + ClG42_07g0090500.10 Clacu07g0905 253503

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Clacu07g0905 410 NCBIfam pentatricopeptide repeat 209 243 IPR002885 -
Clacu07g0905 410 NCBIfam pentatricopeptide repeat 174 207 IPR002885 -
Clacu07g0905 410 NCBIfam pentatricopeptide repeat 106 132 IPR002885 -
Clacu07g0905 410 NCBIfam pentatricopeptide repeat 278 312 IPR002885 -
Clacu07g0905 410 NCBIfam pentatricopeptide repeat 138 172 IPR002885 -
Clacu07g0905 410 NCBIfam pentatricopeptide repeat 314 342 IPR002885 -
Clacu07g0905 410 Pfam PPR repeat 106 132 IPR002885 -
Clacu07g0905 410 Pfam PPR repeat 138 166 IPR002885 -
Clacu07g0905 410 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 311 345 IPR002885 -
Clacu07g0905 410 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 172 206 IPR002885 -
Clacu07g0905 410 Pfam PPR repeat family 275 319 IPR002885 -
Clacu07g0905 410 Pfam PPR repeat family 171 220 IPR002885 -
Clacu07g0905 410 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 207 241 IPR002885 -
Clacu07g0905 410 Gene3D Tetratricopeptide repeat domain 152 251 IPR011990 GO:0005515(InterPro)
Clacu07g0905 410 Gene3D Tetratricopeptide repeat domain 6 151 IPR011990 GO:0005515(InterPro)
Clacu07g0905 410 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 276 310 IPR002885 -
Clacu07g0905 410 PANTHER OS01G0228400 PROTEIN 22 234 - -
Clacu07g0905 410 Gene3D Tetratricopeptide repeat domain 252 410 IPR011990 GO:0005515(InterPro)
Clacu07g0905 410 SUPERFAMILY TPR-like 276 380 IPR011990 GO:0005515(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu07g0905 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu03g0478 Clacu-Chr3:5112421 Clacu07g0905 Clacu-Chr7:22771661 1.30E-26 dispersed
Clacu07g0905 Clacu-Chr7:22771661 Clacu05g0032 Clacu-Chr5:621574 3.90E-07 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g942 . . . . . Bpe13g00453 . . . Cmo16g00710 . . . . . . . . . . . . . . . . . . . . . . . Cone6ag1611 Cone9ag1539 . . Chy07g01284 . . . Bda11g01875 . . . . Bma06g00129 . . . Cma16g00653 . . . . Cpe14g00557 . . . . . . . Cla07g00859 Cam07g0931 Cec07g0996 Cco07g0972 Clacu07g0905 Cmu07g0905 Cre07g1273 Lsi07g00214 Csa04g00517 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012727 1 0 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 0 1 1 1 1 1 1 1 1 28