Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu07g0917 ATGTGGCGCTGTGTTTCTCGTGGCCTTCGCGCTTCTTCTTCCTTTTCCAGGAAATCATCCCCCAATGATCACCTCAGATCTCAATTTTCTAGATTCTTCTCCGCCGATTCGACGGCAAGTCGCTCCTCATACACTGTGGTTGATCACACCTACGATGCGGTTGTGGTAGGCGCGGGTGGTGCAGGGCTTCGAGCTGCTATAGGATTGTCAGAGCATGGATTTAATACTGCTTGCATTACTAAGCTTTTCCCAACTCGTTCTCACACGGTTGCAGCTCAGGGAGGTATAAATGCTGCATTGGGAAACATGACTGAGGATGATTGGAGGTGGCACATGTACGACACTGTCAAGGGGAGTGATTGGCTAGGTGATCAGGATGCCATTCAATACATGTGTAGAGAAGCACCGAAAGCAGTAATTGAGCTTGAGAATTATGGACTTCCATTTTCTCGTACTGAAGATGGAAAAATTTATCAACGTGCTTTTGGTGGTCAGAGCCTGGACTTTGGAAAGGGTGGACAGGCATATCGTTGTGCATGTGCTGCTGACCGAACGGGGCATGCTTTATTGCATACTCTCTATGGCCAGGCTATGAAGCATAACACACAGTTTTTTGTGGAATTTTTTGCTTTGGATCTTTTAATGAATAGTGATGGTAGCTGCCAGGGAGTGATAGCATTAAATATGGAGGATGGTACACTACATCGGTTCCAAGCTGCATCAACAATTTTGGCTACTGGGGGTTATGGCAGAGCATATTTCTCTGCAACCTCTGCTCATACATGCACTGGAGATGGAAATGCCATGGTTGCACGAGCTGGGCTTCCACTTGAGGATTTGGAGTTTGTGCAGTTTCATCCAACGGGAATATATGGTGCTGGGTGCCTTATTACTGAAGGATCTCGTGGTGAAGGTGGCATTCTTAGGAACAGCGAAGGTGAGCGCTTTATGGAACGATATGCCCCAACAGCAAAGGATCTTGCATCAAGGGATGTTGTCTCAAGATCCATGACTATGGAGATTCGGGAGGGTCGTGGTGTAGGACCACTGAAGGACCACATCTATCTTCATTTAAATCACTTGCCCCCAGATGTACTGAAGGAGAGACTTCCGGGTATCTCAGAAACTGCTGCCATTTTTGCTGGCGTTGATGTTACCAAAGAACCCATTCCAGTCTTACCTACAGTGCATTATAATATGGGTGGAATCCCTACGAATCATTATGGAGAGGTTGTTACAATCAAGGGAGATGATCCAGATGCTGTAATTCCAGGATTGATGGCTGCTGGGGAGGCCGCTTGTGCCTCAGTTCATGGTGCCAATAGGCTTGGTGCAAATTCGCTTTTGGACATTGTTGTCTTTGGACGAGCTTGTGCAAATAGGGTAGCAGAGATCAGTAGACCAGGGGCACCGCAAAAGCCGTTGGAAAAAGATGCTGGTGAGAAGACTATTGCATGGCTAGATAAATTAAGAAACTCAAATGGTTCACTGCCCACCTCAAAGATTCGGTTGAACATGCAACGAATTATGCAAAACAATGCTGCTGTTTTCCGAACACAGGAGACCTTGGAAGAAGGTTGCAAATTAATTGACCAGGCCTGGGAGAGTTTCCATGATGTGAAGGTCGCGGACAGGGATTTAATATGGAACACTGATTTGATAGAGACGATTGAATTGGAAAATCTTTTGATAAATGCATGTATTACCATGCACTCTGCTGAAGCCAGGAAAGAAAGCAGAGGAGCACATGCTCGGGAAGATTTCTCAAAAAGAGATGATGAGAACTGGATGAAACACACACTGGGATTCTGGGAGAATGAGAAGGTCAGACTGGACTATAGGCCAGTGCACATGAACACATTGGACGATGAGGTCGAATCATTCCCTCCCAAGGCTCGTGTATACTGA 1908 46.23 MWRCVSRGLRASSSFSRKSSPNDHLRSQFSRFFSADSTASRSSYTVVDHTYDAVVVGAGGAGLRAAIGLSEHGFNTACITKLFPTRSHTVAAQGGINAALGNMTEDDWRWHMYDTVKGSDWLGDQDAIQYMCREAPKAVIELENYGLPFSRTEDGKIYQRAFGGQSLDFGKGGQAYRCACAADRTGHALLHTLYGQAMKHNTQFFVEFFALDLLMNSDGSCQGVIALNMEDGTLHRFQAASTILATGGYGRAYFSATSAHTCTGDGNAMVARAGLPLEDLEFVQFHPTGIYGAGCLITEGSRGEGGILRNSEGERFMERYAPTAKDLASRDVVSRSMTMEIREGRGVGPLKDHIYLHLNHLPPDVLKERLPGISETAAIFAGVDVTKEPIPVLPTVHYNMGGIPTNHYGEVVTIKGDDPDAVIPGLMAAGEAACASVHGANRLGANSLLDIVVFGRACANRVAEISRPGAPQKPLEKDAGEKTIAWLDKLRNSNGSLPTSKIRLNMQRIMQNNAAVFRTQETLEEGCKLIDQAWESFHDVKVADRDLIWNTDLIETIELENLLINACITMHSAEARKESRGAHAREDFSKRDDENWMKHTLGFWENEKVRLDYRPVHMNTLDDEVESFPPKARVY 635
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 23013908 23026286 + ClG42_07g0091700.10 Clacu07g0917 253515

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Clacu07g0917 635 FunFam Succinate dehydrogenase complex, subunit A, flavoprotein (Fp) 40 265 - -
Clacu07g0917 635 ProSitePatterns Fumarate reductase / succinate dehydrogenase FAD-binding site. 86 95 IPR003952 GO:0016491(InterPro)
Clacu07g0917 635 FunFam Succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial 587 635 - -
Clacu07g0917 635 SUPERFAMILY Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain 494 635 IPR037099 GO:0016491(InterPro)
Clacu07g0917 635 NCBIfam succinate dehydrogenase or fumarate reductase, flavoprotein subunit 52 635 IPR014006 GO:0016627(InterPro)|GO:0022900(InterPro)|GO:0050660(InterPro)
Clacu07g0917 635 Gene3D - 475 585 - -
Clacu07g0917 635 FunFam Succinate dehydrogenase flavoprotein subunit (SdhA) 474 590 - -
Clacu07g0917 635 Gene3D succinate dehydrogenase protein domain 586 635 - -
Clacu07g0917 635 Pfam FAD binding domain 52 448 IPR003953 -
Clacu07g0917 635 Gene3D - 52 459 IPR036188 -
Clacu07g0917 635 SUPERFAMILY Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain 280 398 IPR027477 -
Clacu07g0917 635 PANTHER SUCCINATE DEHYDROGENASE 2 FLAVOPROTEIN SUBUNIT 37 635 IPR030664 GO:0000104(PANTHER)|GO:0005749(PANTHER)|GO:0006121(PANTHER)|GO:0008177(PANTHER)|GO:0009055(PANTHER)|GO:0050660(PANTHER)
Clacu07g0917 635 Gene3D Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain 290 393 IPR027477 -
Clacu07g0917 635 FunFam Mitochondrial succinate dehydrogenase flavoprotein subunit 290 393 - -
Clacu07g0917 635 NCBIfam succinate dehydrogenase flavoprotein subunit 49 635 IPR011281 GO:0006099(InterPro)|GO:0016627(InterPro)|GO:0050660(InterPro)
Clacu07g0917 635 SUPERFAMILY FAD/NAD(P)-binding domain 42 471 IPR036188 -
Clacu07g0917 635 PIRSF SDHA_APRA_LASPO 42 625 - -
Clacu07g0917 635 Pfam Fumarate reductase flavoprotein C-term 503 635 IPR015939 GO:0016491(InterPro)
Clacu07g0917 635 FunFam Succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial 394 459 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu07g0917 K00234 - - csv:101211616 1228.77
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu07g0628 Clacu-Chr7:10277875 Clacu07g0917 Clacu-Chr7:23013908 0.00E+00 dispersed
Clacu07g0917 Clacu-Chr7:23013908 Clacu09g1942 Clacu-Chr9:34288773 4.40E-66 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g958 . . . Bda10g00132 . . . Bma15g01000 Cmo04g00839 . . . . . . . . . . . . . . . . . . . . . . . . Cone6ag1616 Cone9ag1541 . . Chy07g01293 . . Blo06g00133 . Bda14g01154 Bpe10g00117 . . . . . . . . . . . Cpe14g00560 . . . . . . . Cla07g00870 Cam07g0941 Cec07g1008 Cco07g0987 Clacu07g0917 Cmu07g0916 Cre07g1287 Lsi07g00203 Csa04g00508 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005005 3 1 1 1 1 2 2 1 2 1 2 2 1 1 1 1 2 2 2 2 1 0 1 1 1 1 1 2 1 1 41