Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu07g0918 ATGGCTTCTTCTTCTTCTTCTCCTAATTTCTCCTTCGGGATTTCTGCTTCTGCTTTCTCTGATCCTTTTCAGGTCGCCGGACCCCCCGATTCTGCCGACCCATCTTTTCATTTCTCTAATTTGGACCACCCTTCTGCTGCCTTTAGGTTTTTCCCTAATTTTGGCGATGCCACCGGTGGAGAGTTTGAATCTGATGAGTGGATGGATAGTTTAGTAGGCGGTGGAGATTCCACGTATAGCTCAAATTTGCCGTCTGCTTGCGATGCTTATGGTGAGTTTGGTCTCTATGGTACAGATCCCTTTAATGGCTCTCCCAGAAGACTCACTGTCGCTTGCTCTCCGCCATCTGAGTTGATCAACCGAGTTGTTCTCCCGGAAAGTTCATACAAAATGAATAGTGTTCCGCCACCATGGCCATCATCTCCACAGTTGGTTAAGGATGATGGACCAACCAATCCACCGGTGGAGAGGTCGGTGAAGAATGATGACGTTGTTGAAGGCTCGTCGAGTGCGGAAGAGGTTGAGTCATCGTCGCCGCTTCTGAAAGTCTTGCTCGATTGTGCGCGGCTCTGCGATTCTGAACCCAACCGAGCAGCGAAAGGTCTTAATCGGATTAGTAAATCGTTACGAGAAGATGGAGATCCGGCTGAACGAGTGGCGTTTTACTTCGGCGAGGCTCTTCGGAAGAGATTATCCTTGACGGTGATGAAGAATTGCTTGGATACAACTGAGAGTGATGCTAATTCTGAAGATTTCTTGCTCTCTTACAAAGCTCTGAACGACGCCTGTCCTTACTCCAAGTTCGCGCATCTAACGGCCAACCAAGCAATTCTGGAAGCTACAGAGAGAGCAAGTAAAATTCACATTGTCGACTTCGGAATCGTTCAAGGCGTTCAATGGGCGGCGCTTCTGCAGGCTTTGGCCACGCGAGCCACTGGAAAGCCTAGCAGAGTTCGTATCTCCGGAATACCAGCGCCGTCGCTTGGAGATTCACCGGCAGCGTCCCTATACGCCACTGGCAATAGACTCTCCGAGTTCGCAAAGCTTCTAGAACTGAATTTCGAGTTCGAACCGATTCTAACGCCGATTGAGAACCTGAACGAATCGAGCTTTAGCGTTCAATCAGACGAGGTATTGGCCGTGAATTTCATGCTTCAATTGTATAATCTCCTCGACGAGGATCCAGCTGGAGTTCATAATGCTCTTCGATTAGCAAAATCGTTGAGCCCTCAAATAGTGACTCTCGGCGAGTACGAGGCGGGTTTGAACCGGATCGGATTCTACAATCGCTTCAAGAACGCATTGAAATTCTACTCCGCCATTTTCGAATCGCTAGAGCCGAATTTGCCTCGAGACTCGCCAGAAAGACTCCAGTTAGAAAAACTGTTACTCGGCCGTCGAATCGCCGGCGTGGTTGGAACCGAAGAAGATTCAAGAAACAAAAGAAGAGTACGCATGGAAGACAAAGATCAATGGAAGAATTTGATGGAAAGCGCCGGATTCGAACCTGTAGCACTCAGCCATTACGCCATTAGTCAGGGGAAAATACTTTTATGGAACTACAATTACAGTTCTCTCTACACTCTGATCGAATCGGCACCGGAGTTTCTGTCGCTGGCATGGAACGAAGTTCCTCTCTTAACTGTATCTTCCTGGCGTTGA 1662 48.44 MASSSSSPNFSFGISASAFSDPFQVAGPPDSADPSFHFSNLDHPSAAFRFFPNFGDATGGEFESDEWMDSLVGGGDSTYSSNLPSACDAYGEFGLYGTDPFNGSPRRLTVACSPPSELINRVVLPESSYKMNSVPPPWPSSPQLVKDDGPTNPPVERSVKNDDVVEGSSSAEEVESSSPLLKVLLDCARLCDSEPNRAAKGLNRISKSLREDGDPAERVAFYFGEALRKRLSLTVMKNCLDTTESDANSEDFLLSYKALNDACPYSKFAHLTANQAILEATERASKIHIVDFGIVQGVQWAALLQALATRATGKPSRVRISGIPAPSLGDSPAASLYATGNRLSEFAKLLELNFEFEPILTPIENLNESSFSVQSDEVLAVNFMLQLYNLLDEDPAGVHNALRLAKSLSPQIVTLGEYEAGLNRIGFYNRFKNALKFYSAIFESLEPNLPRDSPERLQLEKLLLGRRIAGVVGTEEDSRNKRRVRMEDKDQWKNLMESAGFEPVALSHYAISQGKILLWNYNYSSLYTLIESAPEFLSLAWNEVPLLTVSSWR 553
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 23049116 23050777 + ClG42_07g0091800.10 Clacu07g0918 253516
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu07g0918 553 ProSiteProfiles GRAS family profile. 171 553 IPR005202 -
Clacu07g0918 553 MobiDBLite consensus disorder prediction 130 173 - -
Clacu07g0918 553 Pfam GRAS domain family 181 553 IPR005202 -
Clacu07g0918 553 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 173 552 IPR005202 GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0043565(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu07g0918 Clacu-Chr7:23049116 Clacu11g1100 Clacu-Chr11:13857617 1.20E-54 dispersed
Clacu07g0918 Clacu-Chr7:23049116 Clacu01g2009 Clacu-Chr1:32012370 7.50E-179 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
48034 PF03514 GRAS 3.60E-108 CL0063 Clacu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu07g0918 - - - 0.0