Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Clacu07g0930 | ATGAGCGGCCACAAACGAAACTTCACCACCACAGCCGCCGCCGTCAGTCCCATCGGCAGCCCCACCTCCGGCAACATCTCGGACAGCTCCACAAAAGAACAGGACAGGTTCCTTCCGATTGCAAACGTGAGCCGAATCATGAAAAAATCTCTTCCGGCGAACGCCAAAATCTCAAAAGAAGCAAAAGAGACCGTCCAGGAATGTGTGTCGGAATTCATCAGCTTCATCACCGGCGAGGCCTCCGACAAGTGCCAAAGGGAAAAACGGAAGACGATCAACGGAGACGATTTGTTGTGGGCGATGACTACTTTGGGATTCGAAAATTACGTCGGCCCTTTGAAGATTTATCTCAACAAATACAGAGAAACAGAGGAAGAGAAACATTCTTTAGCCAGACAGGACGATCCCTCCCTGTCTCCGGCGAAATCCGCCACCGAACAAATTATTGGTGGGAAATCGGCGAATTCGGTGATGGATTTTCAGAATTTCAATCCTGGGTTTTATTCATTTGGAAATCAAAATCAAAATCAGGGGAACCAGAAGAGTTTCAATATAATCGATGGCGTTGGATTTGGGGAAAGTTTGAGGAGTTTCAATATGAATGGAGTCCATGAAAATGGAGAAGGGAATCGAGCTCGAGCTATGGCGGCTCATCTTCAACAGAGCTCTGGTTGGTGA | 678 | 47.64 | MSGHKRNFTTTAAAVSPIGSPTSGNISDSSTKEQDRFLPIANVSRIMKKSLPANAKISKEAKETVQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFENYVGPLKIYLNKYRETEEEKHSLARQDDPSLSPAKSATEQIIGGKSANSVMDFQNFNPGFYSFGNQNQNQGNQKSFNIIDGVGFGESLRSFNMNGVHENGEGNRARAMAAHLQQSSGW | 225 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
7 | 23239577 | 23240254 | - | ClG42_07g0093000.10 | Clacu07g0930 | 253528 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Clacu07g0930 | 225 | PRINTS | CCAAT-binding transcription factor subunit A signature | 103 | 121 | - | - | |
Clacu07g0930 | 225 | PRINTS | CCAAT-binding transcription factor subunit A signature | 84 | 102 | - | - | |
Clacu07g0930 | 225 | PRINTS | CCAAT-binding transcription factor subunit A signature | 65 | 83 | - | - | |
Clacu07g0930 | 225 | Pfam | Histone-like transcription factor (CBF/NF-Y) and archaeal histone | 37 | 101 | IPR003958 | - | |
Clacu07g0930 | 225 | PANTHER | CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED | 25 | 172 | IPR027113 | GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0001228(InterPro)|GO:0006355(InterPro)|GO:0006357(PANTHER)|GO:0016602(InterPro)|GO:0016602(PANTHER) | |
Clacu07g0930 | 225 | ProSitePatterns | NF-YB/HAP3 subunit signature. | 68 | 84 | IPR003956 | GO:0005634(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Clacu07g0930 | 225 | FunFam | Nuclear transcription factor Y subunit B-3 | 26 | 149 | - | - | |
Clacu07g0930 | 225 | SUPERFAMILY | Histone-fold | 34 | 136 | IPR009072 | GO:0046982(InterPro) | |
Clacu07g0930 | 225 | MobiDBLite | consensus disorder prediction | 1 | 33 | - | - | |
Clacu07g0930 | 225 | Coils | Coil | 113 | 133 | - | - | |
Clacu07g0930 | 225 | Gene3D | Histone, subunit A | 24 | 157 | IPR009072 | GO:0046982(InterPro) | |
Clacu07g0930 | 225 | MobiDBLite | consensus disorder prediction | 127 | 146 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Clacu02g0948 | Clacu-Chr2:12387732 | Clacu07g0930 | Clacu-Chr7:23239577 | 1.60E-46 | dispersed | |
Clacu02g1419 | Clacu-Chr2:27523177 | Clacu07g0930 | Clacu-Chr7:23239577 | 1.70E-40 | dispersed | |
Clacu07g0930 | Clacu-Chr7:23239577 | Clacu10g0408 | Clacu-Chr10:5163115 | 1.70E-41 | dispersed | |
Clacu07g0930 | Clacu-Chr7:23239577 | Clacu10g2029 | Clacu-Chr10:33755927 | 3.20E-43 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
48035 | PF00808 | CBFD_NFYB_HMF | 6.70E-27 | CL0012 | Clacu | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Clacu07g0930 | K08065 | - | csv:101214273 | 409.453 |