Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu07g0930 ATGAGCGGCCACAAACGAAACTTCACCACCACAGCCGCCGCCGTCAGTCCCATCGGCAGCCCCACCTCCGGCAACATCTCGGACAGCTCCACAAAAGAACAGGACAGGTTCCTTCCGATTGCAAACGTGAGCCGAATCATGAAAAAATCTCTTCCGGCGAACGCCAAAATCTCAAAAGAAGCAAAAGAGACCGTCCAGGAATGTGTGTCGGAATTCATCAGCTTCATCACCGGCGAGGCCTCCGACAAGTGCCAAAGGGAAAAACGGAAGACGATCAACGGAGACGATTTGTTGTGGGCGATGACTACTTTGGGATTCGAAAATTACGTCGGCCCTTTGAAGATTTATCTCAACAAATACAGAGAAACAGAGGAAGAGAAACATTCTTTAGCCAGACAGGACGATCCCTCCCTGTCTCCGGCGAAATCCGCCACCGAACAAATTATTGGTGGGAAATCGGCGAATTCGGTGATGGATTTTCAGAATTTCAATCCTGGGTTTTATTCATTTGGAAATCAAAATCAAAATCAGGGGAACCAGAAGAGTTTCAATATAATCGATGGCGTTGGATTTGGGGAAAGTTTGAGGAGTTTCAATATGAATGGAGTCCATGAAAATGGAGAAGGGAATCGAGCTCGAGCTATGGCGGCTCATCTTCAACAGAGCTCTGGTTGGTGA 678 47.64 MSGHKRNFTTTAAAVSPIGSPTSGNISDSSTKEQDRFLPIANVSRIMKKSLPANAKISKEAKETVQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFENYVGPLKIYLNKYRETEEEKHSLARQDDPSLSPAKSATEQIIGGKSANSVMDFQNFNPGFYSFGNQNQNQGNQKSFNIIDGVGFGESLRSFNMNGVHENGEGNRARAMAAHLQQSSGW 225
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 23239577 23240254 - ClG42_07g0093000.10 Clacu07g0930 253528
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu07g0930 225 PRINTS CCAAT-binding transcription factor subunit A signature 103 121 - -
Clacu07g0930 225 PRINTS CCAAT-binding transcription factor subunit A signature 84 102 - -
Clacu07g0930 225 PRINTS CCAAT-binding transcription factor subunit A signature 65 83 - -
Clacu07g0930 225 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 37 101 IPR003958 -
Clacu07g0930 225 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 25 172 IPR027113 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0001228(InterPro)|GO:0006355(InterPro)|GO:0006357(PANTHER)|GO:0016602(InterPro)|GO:0016602(PANTHER)
Clacu07g0930 225 ProSitePatterns NF-YB/HAP3 subunit signature. 68 84 IPR003956 GO:0005634(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Clacu07g0930 225 FunFam Nuclear transcription factor Y subunit B-3 26 149 - -
Clacu07g0930 225 SUPERFAMILY Histone-fold 34 136 IPR009072 GO:0046982(InterPro)
Clacu07g0930 225 MobiDBLite consensus disorder prediction 1 33 - -
Clacu07g0930 225 Coils Coil 113 133 - -
Clacu07g0930 225 Gene3D Histone, subunit A 24 157 IPR009072 GO:0046982(InterPro)
Clacu07g0930 225 MobiDBLite consensus disorder prediction 127 146 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu02g0948 Clacu-Chr2:12387732 Clacu07g0930 Clacu-Chr7:23239577 1.60E-46 dispersed
Clacu02g1419 Clacu-Chr2:27523177 Clacu07g0930 Clacu-Chr7:23239577 1.70E-40 dispersed
Clacu07g0930 Clacu-Chr7:23239577 Clacu10g0408 Clacu-Chr10:5163115 1.70E-41 dispersed
Clacu07g0930 Clacu-Chr7:23239577 Clacu10g2029 Clacu-Chr10:33755927 3.20E-43 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
48035 PF00808 CBFD_NFYB_HMF 6.70E-27 CL0012 Clacu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu07g0930 K08065 - csv:101214273 409.453