Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu07g0931 ATGAAGAAACGGCTAAATGGGGGTTTGGTCTTGCTCTGGTTCATCTTTATGGGGCAATTCTATACCAATGCGTCGGCAACTGTAGAAGCTACTGCTCTGCACATATTTCGATTGAATTTGGAAGATCCAAACAATGTTCTGCAGAGTTGGGATCCCACCCTTGTTAATCCCTGCACTTGGTTTCATGTCACTTGCAACAATGAAAATAACATTATAAGAGTCGACCTTGGAAATGCTGGATTGTCTGGTAAATTAGTACCACAGCTTGGTCAACTTAAAAGTCTTCAATACTTGGAGCTCTATGGCAACGACATAAGTGGAGAGATTCCAGATGAGCTCGGGAATCTGGAAAATTTGGTTAGCCTAGACCTTTACTTGAACGGTTTAACTGGCCCGATTCCAGACACATTTGGCAAGCTCACACAATTGCGTTTCCTTCGGCTAAATGACAACAAACTATCTGGCTTGATTCCGATTTCCTTGACTAATATTTCCACCCTGCAAGTCTTGGATCTATCAAACAACCTTTTATCTGGAAAGGTTCCAAATAATGGCTCATTTTCACTATTTACTCCCATCAGTTTTGCAAATAACTTGGATCTATGTGGTCTGGTGACTGGGAAACCTTGCCCTGGGGATCCTCCCTTTTCTCCACCACCGCCATTTGTTCCACAGTCAACATTTTCTTCCCATGAAGTAAACAATCCCAATGGAGCAATTGTTGGAGGAGTTGCTGCAGGTGCTGCTTTACTCTTTGCCACTCCGGCTATCATATTCGTCTATTGGCATTGGAGGAGATCACGAGAAATATTCTTCGATGTCCCAGAAGAAGATTCAGAGATCAACTTGGGGCAGCTGAAACGGTTTTCTCTGAGAGACTTACAAGTTGCAACAGATAACTTCTGCAACAAAAATATTCTCGGTCGAGGTGGATTTGGTAAAGTCTATAGGGGACGTCTAGCTGATGGCTCATTAGTAGCAGTAAAAAGGCTCAAAGAAGAGCGTACGCCAGGTGGAGAGTTGCAGTTCCAAACAGAAGTAGAGATGATTAGCATGGCAGTGCACCGGAATCTTTTGCGACTACATGGATTTTGTACAACATCAAGTGAACGCCTCCTTGTTTATCCTTATATGGCCAATGGAAGTGTTGCATCATGTTTAAGAGAACGTCCACAATCTGAAGCTCCTCTGGACTGGCCAACTCGAAAGAAAGTTGCATTAGGTTCTGCAAGGGGCCTTTCTTATTTACATGATGGATGTGATCCGAAAATCATCCATCGTGATGTGAAGGCTGCAAATATTTTACTGGATGAGGAATTTGAGGCTGTCGTCGGCGACTTTGGTCTCGCAAAGTTAATGGACTACAAGGATACTCATGTTACAACCGCAGTAAGAGGTACTATTGGGCATATAGCTCCAGAGTATCTCTCAACTGGGAAATCATCTGAGAAGACCGATGTTTTTGGTTATGGCATTATGCTCTTGGAGCTAATAACTGGACAGAGGGCTTTCGATCTTGCTCGACTGGCAAACGATGAAGATGTTATGCTGCTTGATTGGGTCAAAGGCCTTCTGAAAGAGAAAAAGTTGGAGATGTTGGTTGACCCTGATCTGAAGGACAACTATGATGAAATTGAAGTTGAGCAAATAATCCAAGTAGCACTTCTCTGCACACAGAGCTCCCCTATGGAACGACCGAAAATGTCTGATGTGGTCAGAATGCTCGAAGGAGACGGCTTGACTGAGCGATGGGAGGAATGGCAGAGAGTCGAGGTAGTCTATCATGAAACCGAATTAGCATCTTCTCAAACTTCTGAATGGATGGTCGATTCGACTGAAAACGTTCGTGCTTTTGAATTATCTGGTCCTAGATAA 1875 43.52 MKKRLNGGLVLLWFIFMGQFYTNASATVEATALHIFRLNLEDPNNVLQSWDPTLVNPCTWFHVTCNNENNIIRVDLGNAGLSGKLVPQLGQLKSLQYLELYGNDISGEIPDELGNLENLVSLDLYLNGLTGPIPDTFGKLTQLRFLRLNDNKLSGLIPISLTNISTLQVLDLSNNLLSGKVPNNGSFSLFTPISFANNLDLCGLVTGKPCPGDPPFSPPPPFVPQSTFSSHEVNNPNGAIVGGVAAGAALLFATPAIIFVYWHWRRSREIFFDVPEEDSEINLGQLKRFSLRDLQVATDNFCNKNILGRGGFGKVYRGRLADGSLVAVKRLKEERTPGGELQFQTEVEMISMAVHRNLLRLHGFCTTSSERLLVYPYMANGSVASCLRERPQSEAPLDWPTRKKVALGSARGLSYLHDGCDPKIIHRDVKAANILLDEEFEAVVGDFGLAKLMDYKDTHVTTAVRGTIGHIAPEYLSTGKSSEKTDVFGYGIMLLELITGQRAFDLARLANDEDVMLLDWVKGLLKEKKLEMLVDPDLKDNYDEIEVEQIIQVALLCTQSSPMERPKMSDVVRMLEGDGLTERWEEWQRVEVVYHETELASSQTSEWMVDSTENVRAFELSGPR 624
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 23276338 23280368 + ClG42_07g0093100.10 Clacu07g0931 253529
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu07g0931 624 Gene3D Transferase(Phosphotransferase) domain 1 378 595 - -
Clacu07g0931 624 Pfam Leucine Rich Repeat 142 163 IPR001611 GO:0005515(InterPro)
Clacu07g0931 624 Pfam Leucine Rich Repeat 167 184 IPR001611 GO:0005515(InterPro)
Clacu07g0931 624 Pfam Leucine Rich Repeat 118 140 IPR001611 GO:0005515(InterPro)
Clacu07g0931 624 Pfam Leucine Rich Repeat 94 116 IPR001611 GO:0005515(InterPro)
Clacu07g0931 624 ProSitePatterns Serine/Threonine protein kinases active-site signature. 424 436 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Clacu07g0931 624 FunFam Somatic embryogenesis receptor-like kinase 1 378 595 - -
Clacu07g0931 624 SUPERFAMILY L domain-like 29 195 - -
Clacu07g0931 624 ProSiteProfiles Protein kinase domain profile. 301 588 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu07g0931 624 ProSitePatterns Protein kinases ATP-binding region signature. 307 329 IPR017441 GO:0005524(InterPro)
Clacu07g0931 624 Gene3D Ribonuclease Inhibitor 26 212 IPR032675 -
Clacu07g0931 624 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 17 624 - -
Clacu07g0931 624 Pfam Leucine rich repeat N-terminal domain 29 66 IPR013210 -
Clacu07g0931 624 Gene3D Phosphorylase Kinase; domain 1 271 377 - -
Clacu07g0931 624 FunFam Somatic embryogenesis receptor kinase 1 271 377 - -
Clacu07g0931 624 Pfam Protein tyrosine and serine/threonine kinase 304 575 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Clacu07g0931 624 SUPERFAMILY Protein kinase-like (PK-like) 281 576 IPR011009 -
Clacu07g0931 624 SMART serkin_6 301 575 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu07g0931 624 FunFam Somatic embryogenesis receptor kinase 1 25 212 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu07g0931 Clacu-Chr7:23276338 Clacu08g0459 Clacu-Chr8:7191733 3.50E-241 dispersed
Clacu07g0931 Clacu-Chr7:23276338 Clacu10g0924 Clacu-Chr10:19182386 9.00E-205 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
73695 PF00069 Pkinase 1.50E-43 CL0016 Clacu PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu07g0931 K13418 - csv:101208905 1103.97