Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu07g0936 ATGAACTCATCATCCACAAAATTTTACAATCCAGGAAGGATGGGATTGTATGAACCTCTCCACCATATTGGAATGTGGGGAGAAACCTTTAGAACCAGTGCCAATTTAGATGCACAATCCTCCTTTATTATTGAAGCTGATACCAAGCTTGAAACTCAGTCGGATGATGCTTCACTCGGCTCACTTGGAGATCCTCATGTATATGACCAAGATGATACCAAACGCATTGATAAGATTCAAAGACGGCTGGCACAAAATCGGGAAGCAGCTCGCAAAAGCCGGCTGCGGAAAAAGGCCTATATTAAGCAATTGGAAACAAGCCGTGTAAAACTCATTCAATTGGAGCAAGAGCTTGAAAAGGCAAGACAACAAGGTCTCTTGGCTGGATCCCGATTTGACAATAACCAGTTGGGTTTATCAGGAACCACAAATTCAGGCATCTCCGCATTTGAATCAGAGTATGAGCAATGGGTGGAGGAGCAGAACAGGCAGATTTGTGATCTGAGGACTGCTGTGCATGCTGATATTACTGATATCGAGCTTCGAATACTTGTCGAAAATGCAATGAGACACTACTTTAAATTTTTTCGCATGAAAGCTAAAGCTGCAAAAGCCGATGTCTCTTACATAATGTCAGGCATGTGGAAAACATCGGCCGAAAGACTTTTCTTATGGATTGGAGGATTTCGACCTTCAGAACTCCTCAAGGTTTTGATACCTCAGCTGGAGACATTAACCGAACAACAAATTTCGGAAACTGGTAGCCTTAGGAAATCTTGTCTACAAGCAGAAGATGCTCTTAGACAAGGTATGGAAAAACTACAACAAAATCTATTTGAGAGCGTAGTGGCTGGTCAGCTGGGTGAAGGAAGTCATCCTCTACAAATGACTGCTGCAATGGAGAGATTAGAAGCGCTCATTAGCTTTGTGAATCAGGCTGACCATCTACGACAGGAAACATTGCAACAGATGTACAAAATTCTATCGACTCGACAATCTGCTCAAGGCCTTCTTATTCTTGGAGAGTTTTTCCAACGACTCCGAGCATTGAGCTCACTTTGGGCTAATCGTCCTTTCTGTCTCCGGCTGGAACTCACATTGTTGGGAAGGAGAAAAGAAAGGAAGGAGAAAAGAGAGCGAGGAGGAAGATCTGCTTTTTGCACTGGATCTGTTTCACGTCCGTCTCTCGTGTCAGATCTGCTCGCCCCTCGCCACATATGCTCTCCCCGCGCTGGAGATGCGTCATATCTACTTGCCACGTGTTGGAAGATGCGCCAAATCTACTCACCCGAGTTAGAAGATGAACCAGATTTGCTTGCCACGTCGGGGTTAATGTACGCTCTGAGACCATCATTCTCTGTTTCCTCTCGCCTTAATCCTCCTTCCTTCCTCCGAATTGATCCATTTTTGTATTATTTCTTCTCTTCTTCTTCCCAAACCCAAGCCTCTGCTTCAAATGGAATCGTCATCCAATACCTCATCGATACCTTCCAACTGTCCCCCGCCAGAGCGGTGTCGATTATGAGCACCCGTAGAGGCCTTCAATCAACTGAAAAGCCTCAAGCTGTGTACAGATATCTTTCAGAGCTTGGATTATCCGACGCCCACATTAAATCGGCGATTCGAATCACGCCGCAGATCGCGTTTTCCAGCATTGAGAAAACTCTGAAGCCAAAGATAGAGTTCTTCCAGAATCTTGGCTTGGTCGGCTCCGATTTGGGTAAGTTCATTTCCAGGCATTCTGCGCTTTTAACTGTTAGTTTGGAGAAGAAATTGGTGCCCAGTGTTGAGATTCTTAAGAATGTTTTCCACAAGGATATTTGTAGTAACGATCTCTTGCTAGTTATGCAGCGATGTTCTTATGCTATTATGAGATCCCCATATAAAAGGTTGTCTGTAAATATTAACTACTTACAAAGTTGTGGGATTGTTGATTCTCAACTCTCTATGTTACTGAAGAGACAACCTGGACTTTTTTGTAATCGTGAATCTCGAGTTAAAGATATTGTTTCCATGGTTGTAGAAACTGGTTTTTCTACCAATACTAAAATGTTTGTTCATGGACTTCATGCTATCAGTAGTGTAAGTAATGCTACCTTTAACAAGAAAGTGGAGCTGATTTGTAGCTTTGGAATAACCGAGAAAGAATGTATGAGAATGTTTACTTCTGCTCCTGTTTTGGTAAGGACCTCCATTGGGAAACTTAAGCTTGGTTTAGAATTTTTCATGAACGAGGCAAAAGTTGGCAAATCAGATATTGTTCGTAATCCTGCTTGTTTGATGCACGCAATGCAGGGGAGAGTGCTCCCTCGTTATAGAGTTCTACAGATTGTGAAGTTGAAGAGGCTAAAGAAGAAGCACCCGAAATTAATCGCTACATTGGGGATGTCTGATGAGGATTTCTTGGATAAATTTGTGTGTAAATTTCCTGATAATATGAAAGAATTATTGGTGGCCTTTAGAGGTGATTCTGTGGGTGCATTGCAGCCTAAGGAGCTAGCAACATGA 2508 42.82 MNSSSTKFYNPGRMGLYEPLHHIGMWGETFRTSANLDAQSSFIIEADTKLETQSDDASLGSLGDPHVYDQDDTKRIDKIQRRLAQNREAARKSRLRKKAYIKQLETSRVKLIQLEQELEKARQQGLLAGSRFDNNQLGLSGTTNSGISAFESEYEQWVEEQNRQICDLRTAVHADITDIELRILVENAMRHYFKFFRMKAKAAKADVSYIMSGMWKTSAERLFLWIGGFRPSELLKVLIPQLETLTEQQISETGSLRKSCLQAEDALRQGMEKLQQNLFESVVAGQLGEGSHPLQMTAAMERLEALISFVNQADHLRQETLQQMYKILSTRQSAQGLLILGEFFQRLRALSSLWANRPFCLRLELTLLGRRKERKEKRERGGRSAFCTGSVSRPSLVSDLLAPRHICSPRAGDASYLLATCWKMRQIYSPELEDEPDLLATSGLMYALRPSFSVSSRLNPPSFLRIDPFLYYFFSSSSQTQASASNGIVIQYLIDTFQLSPARAVSIMSTRRGLQSTEKPQAVYRYLSELGLSDAHIKSAIRITPQIAFSSIEKTLKPKIEFFQNLGLVGSDLGKFISRHSALLTVSLEKKLVPSVEILKNVFHKDICSNDLLLVMQRCSYAIMRSPYKRLSVNINYLQSCGIVDSQLSMLLKRQPGLFCNRESRVKDIVSMVVETGFSTNTKMFVHGLHAISSVSNATFNKKVELICSFGITEKECMRMFTSAPVLVRTSIGKLKLGLEFFMNEAKVGKSDIVRNPACLMHAMQGRVLPRYRVLQIVKLKRLKKKHPKLIATLGMSDEDFLDKFVCKFPDNMKELLVAFRGDSVGALQPKELAT 835
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 23323509 23333898 - ClG42_07g0093600.10 Clacu07g0936 253534
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu07g0936 835 Pfam bZIP transcription factor 77 115 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Clacu07g0936 835 Coils Coil 97 124 - -
Clacu07g0936 835 ProSiteProfiles DOG1 domain profile. 147 357 IPR025422 GO:0006351(InterPro)|GO:0043565(InterPro)
Clacu07g0936 835 SMART mt_12 649 679 IPR003690 GO:0003690(InterPro)|GO:0006355(InterPro)
Clacu07g0936 835 SMART mt_12 718 749 IPR003690 GO:0003690(InterPro)|GO:0006355(InterPro)
Clacu07g0936 835 SMART mt_12 750 781 IPR003690 GO:0003690(InterPro)|GO:0006355(InterPro)
Clacu07g0936 835 SMART mt_12 538 569 IPR003690 GO:0003690(InterPro)|GO:0006355(InterPro)
Clacu07g0936 835 SMART mt_12 574 606 IPR003690 GO:0003690(InterPro)|GO:0006355(InterPro)
Clacu07g0936 835 SMART mt_12 683 713 IPR003690 GO:0003690(InterPro)|GO:0006355(InterPro)
Clacu07g0936 835 SMART mt_12 613 644 IPR003690 GO:0003690(InterPro)|GO:0006355(InterPro)
Clacu07g0936 835 FunFam BZIP family transcription factor 77 126 - -
Clacu07g0936 835 Pfam Seed dormancy control 164 239 IPR025422 GO:0006351(InterPro)|GO:0043565(InterPro)
Clacu07g0936 835 Gene3D - 77 127 - -
Clacu07g0936 835 Pfam mTERF 694 802 IPR003690 GO:0003690(InterPro)|GO:0006355(InterPro)
Clacu07g0936 835 Pfam mTERF 610 705 IPR003690 GO:0003690(InterPro)|GO:0006355(InterPro)
Clacu07g0936 835 Pfam mTERF 526 679 IPR003690 GO:0003690(InterPro)|GO:0006355(InterPro)
Clacu07g0936 835 Gene3D Transcription termination factor 3, mitochondrial 606 815 IPR038538 -
Clacu07g0936 835 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 76 120 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Clacu07g0936 835 FunFam Mitochondrial transcription termination factor-like 588 813 - -
Clacu07g0936 835 PANTHER TRANSCRIPTION FACTOR TGA9 2 359 - -
Clacu07g0936 835 SMART brlzneu 74 136 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Clacu07g0936 835 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 81 96 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Clacu07g0936 835 SUPERFAMILY Leucine zipper domain 78 119 IPR046347 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu07g0936 Clacu-Chr7:23323509 Clacu11g1053 Clacu-Chr11:13091079 1.40E-91 dispersed
Clacu07g0933 Clacu-Chr7:23301449 Clacu07g0936 Clacu-Chr7:23323509 4.30E-205 proximal
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
48037 PF02536 mTERF 1.60E-14 No_clan Clacu TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu07g0936 K14431 - csv:116401613 671.774