Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu07g0944 ATGGTTTTTCTTTTTCTCCTCTTCTATTTCTCAAAATCGGATGGCTCTCTCCTCTTATCTGCAGCAAGGGAAGAAAATCGAGTAGAAAAATTCAGAAATGGACTCATCAAAAAGGCTTATGAACTCTCTGTTCTTTGCGATATTGATATTGCTCTTATTATGTTCTCTCCTTCCGGCCGCCTCAGCCAGTTCTCCGGCCGCCGCAGAATTGAGGATGTGCTTGCTCGTTACATAAATTTGCCCGATCATGATAGAGGAAGCGTTGTTCATAATAAAGAGTTTTTACTTGGGACACTAAATAATTTGAAGACAGAGAACGAGATCGCACTCCAACTTGTCAATCCTACATCAAGCAACTCCAATGTTGAGGAGCTTCAACAAGAGGTCGGTACATTGAGACATGAGCTGCAACTTGCGGAGCAGCAGCTAAGGTTATTTGAACCGGATCCTCTTTCATTCACATCGAATGGTGAAATAGATTCTTGTGAGAAGAATCTTTTAGACACTTTGGCGCGGATCACCCAAAGAAAGAAAGATTTATTAAGTACTCACTTATCTCCTTATGATCGTCCAAATGGGATTCAGCTATATTTGGATTCAAAAGACGGAATACCAACATCTTTTGAAACCGATGTTGCAAATTGGTTGCCCGAAAATGGCCAGAACTCGTCCCAGATTTGTGTTGCATCTGAGTCATCTTCGATTCCTCAAAGTGGTCAATATCCAACCACAGTTTATGATCAAGTATCACAAGCAACAAACATTAATGTTGGGTCATGTAACATTGGTGGGTGCGACATTGGAATCCCCAACGATGATGGTTACTCTCCTTGGCATCACAACTACACCACAACTCAGCTCCTCTCTTCCTTCATCCCACAAACTTCCTTTGATACTTTGAAGCATGACATTGGAGAACCTTGTATGAATACAATGATGTCGCAACAACAAGTTGATAGCATTTCAAATGGGAATCAAATGCCTCTAAGTGATGGAAGTGCCAATTACGATAATGGCAAGTTGCCTCAACTCAACGTGGACTAA 1044 41.38 MVFLFLLFYFSKSDGSLLLSAAREENRVEKFRNGLIKKAYELSVLCDIDIALIMFSPSGRLSQFSGRRRIEDVLARYINLPDHDRGSVVHNKEFLLGTLNNLKTENEIALQLVNPTSSNSNVEELQQEVGTLRHELQLAEQQLRLFEPDPLSFTSNGEIDSCEKNLLDTLARITQRKKDLLSTHLSPYDRPNGIQLYLDSKDGIPTSFETDVANWLPENGQNSSQICVASESSSIPQSGQYPTTVYDQVSQATNINVGSCNIGGCDIGIPNDDGYSPWHHNYTTTQLLSSFIPQTSFDTLKHDIGEPCMNTMMSQQQVDSISNGNQMPLSDGSANYDNGKLPQLNVD 347
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 23442786 23452383 + ClG42_07g0094400.10 Clacu07g0944 253542

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Clacu07g0944 347 Gene3D - 29 96 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Clacu07g0944 347 PANTHER SERUM RESPONSE FACTOR HOMOLOG 28 234 IPR050142 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
Clacu07g0944 347 SUPERFAMILY SRF-like 30 92 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Clacu07g0944 347 PRINTS MADS domain signature 30 45 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Clacu07g0944 347 PRINTS MADS domain signature 45 66 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Clacu07g0944 347 ProSiteProfiles MADS-box domain profile. 30 68 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Clacu07g0944 347 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 31 64 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Clacu07g0944 347 MobiDBLite consensus disorder prediction 316 347 - -
Clacu07g0944 347 Coils Coil 122 142 - -
Clacu07g0944 347 SMART madsneu2 21 67 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu07g0944 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu07g0944 Clacu-Chr7:23442786 Clacu08g0058 Clacu-Chr8:1344694 1.20E-09 dispersed
Clacu07g0944 Clacu-Chr7:23442786 Clacu05g2617 Clacu-Chr5:33934204 3.70E-14 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Clacu05g2617 . 1 290 Type I MADS-box Gene Family AT2G03060 55.8 9.4e-88 320.9
Clacu10g1001 . 1 165 Type I MADS-box Gene Family AT5G60440 61.9 1.6e-50 196.8
Clacu07g0944 . 30 181 Type I MADS-box Gene Family AT1G77950 56.4 1.5e-41 166.8
Clacu03g1822 . 1 163 Type I MADS-box Gene Family AT5G48670 64.4 6.7e-55 211.5
Clacu01g1048 . 1 157 Type I MADS-box Gene Family AT5G48670 58.0 1.2e-46 184.1
Clacu05g2617 . 1 290 Type I MADS-box Gene Family AT2G03060 55.8 9.4e-88 320.9
Clacu10g1001 . 1 165 Type I MADS-box Gene Family AT5G60440 61.9 1.6e-50 196.8
Clacu07g0944 . 30 181 Type I MADS-box Gene Family AT1G77950 56.4 1.5e-41 166.8
Clacu03g1822 . 1 163 Type I MADS-box Gene Family AT5G48670 64.4 6.7e-55 211.5
Clacu01g1048 . 1 157 Type I MADS-box Gene Family AT5G48670 58.0 1.2e-46 184.1
Clacu05g2617 . 1 290 Type I MADS-box Gene Family AT2G03060 55.8 9.4e-88 320.9
Clacu10g1001 . 1 165 Type I MADS-box Gene Family AT5G60440 61.9 1.6e-50 196.8
Clacu03g1822 . 1 163 Type I MADS-box Gene Family AT5G48670 64.4 6.7e-55 211.5
Clacu01g1048 . 1 157 Type I MADS-box Gene Family AT5G48670 58.0 1.2e-46 184.1
Clacu07g0944 . 30 181 Type I MADS-box Gene Family AT1G77950 56.4 1.5e-41 166.8
Clacu05g2617 . 1 290 Type I MADS-box Gene Family AT2G03060 55.8 9.4e-88 320.9
Clacu10g1001 . 1 165 Type I MADS-box Gene Family AT5G60440 61.9 1.6e-50 196.8
Clacu03g1822 . 1 163 Type I MADS-box Gene Family AT5G48670 64.4 6.7e-55 211.5
Clacu01g1048 . 1 157 Type I MADS-box Gene Family AT5G48670 58.0 1.2e-46 184.1
Clacu07g0944 . 30 181 Type I MADS-box Gene Family AT1G77950 56.4 1.5e-41 166.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008266 1 1 2 1 1 1 1 1 1 1 1 1 1 2 2 1 1 3 1 1 1 1 1 1 1 0 1 1 1 2 35
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
48038 PF00319 SRF-TF 2.10E-14 No_clan Clacu TF