Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu07g0944 ATGGTTTTTCTTTTTCTCCTCTTCTATTTCTCAAAATCGGATGGCTCTCTCCTCTTATCTGCAGCAAGGGAAGAAAATCGAGTAGAAAAATTCAGAAATGGACTCATCAAAAAGGCTTATGAACTCTCTGTTCTTTGCGATATTGATATTGCTCTTATTATGTTCTCTCCTTCCGGCCGCCTCAGCCAGTTCTCCGGCCGCCGCAGAATTGAGGATGTGCTTGCTCGTTACATAAATTTGCCCGATCATGATAGAGGAAGCGTTGTTCATAATAAAGAGTTTTTACTTGGGACACTAAATAATTTGAAGACAGAGAACGAGATCGCACTCCAACTTGTCAATCCTACATCAAGCAACTCCAATGTTGAGGAGCTTCAACAAGAGGTCGGTACATTGAGACATGAGCTGCAACTTGCGGAGCAGCAGCTAAGGTTATTTGAACCGGATCCTCTTTCATTCACATCGAATGGTGAAATAGATTCTTGTGAGAAGAATCTTTTAGACACTTTGGCGCGGATCACCCAAAGAAAGAAAGATTTATTAAGTACTCACTTATCTCCTTATGATCGTCCAAATGGGATTCAGCTATATTTGGATTCAAAAGACGGAATACCAACATCTTTTGAAACCGATGTTGCAAATTGGTTGCCCGAAAATGGCCAGAACTCGTCCCAGATTTGTGTTGCATCTGAGTCATCTTCGATTCCTCAAAGTGGTCAATATCCAACCACAGTTTATGATCAAGTATCACAAGCAACAAACATTAATGTTGGGTCATGTAACATTGGTGGGTGCGACATTGGAATCCCCAACGATGATGGTTACTCTCCTTGGCATCACAACTACACCACAACTCAGCTCCTCTCTTCCTTCATCCCACAAACTTCCTTTGATACTTTGAAGCATGACATTGGAGAACCTTGTATGAATACAATGATGTCGCAACAACAAGTTGATAGCATTTCAAATGGGAATCAAATGCCTCTAAGTGATGGAAGTGCCAATTACGATAATGGCAAGTTGCCTCAACTCAACGTGGACTAA 1044 41.38 MVFLFLLFYFSKSDGSLLLSAAREENRVEKFRNGLIKKAYELSVLCDIDIALIMFSPSGRLSQFSGRRRIEDVLARYINLPDHDRGSVVHNKEFLLGTLNNLKTENEIALQLVNPTSSNSNVEELQQEVGTLRHELQLAEQQLRLFEPDPLSFTSNGEIDSCEKNLLDTLARITQRKKDLLSTHLSPYDRPNGIQLYLDSKDGIPTSFETDVANWLPENGQNSSQICVASESSSIPQSGQYPTTVYDQVSQATNINVGSCNIGGCDIGIPNDDGYSPWHHNYTTTQLLSSFIPQTSFDTLKHDIGEPCMNTMMSQQQVDSISNGNQMPLSDGSANYDNGKLPQLNVD 347
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 23442786 23452383 + ClG42_07g0094400.10 Clacu07g0944 253542
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu07g0944 347 Gene3D - 29 96 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Clacu07g0944 347 PANTHER SERUM RESPONSE FACTOR HOMOLOG 28 234 IPR050142 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
Clacu07g0944 347 SUPERFAMILY SRF-like 30 92 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Clacu07g0944 347 PRINTS MADS domain signature 30 45 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Clacu07g0944 347 PRINTS MADS domain signature 45 66 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Clacu07g0944 347 ProSiteProfiles MADS-box domain profile. 30 68 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Clacu07g0944 347 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 31 64 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Clacu07g0944 347 MobiDBLite consensus disorder prediction 316 347 - -
Clacu07g0944 347 Coils Coil 122 142 - -
Clacu07g0944 347 SMART madsneu2 21 67 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu07g0944 Clacu-Chr7:23442786 Clacu08g0058 Clacu-Chr8:1344694 1.20E-09 dispersed
Clacu07g0944 Clacu-Chr7:23442786 Clacu05g2617 Clacu-Chr5:33934204 3.70E-14 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
48038 PF00319 SRF-TF 2.10E-14 No_clan Clacu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu07g0944 - - - 0.0