Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu07g0961 ATGATGGTGGAGTTCCATGGAGAAATCCGAGACCCCAACGATGGTGAAGACCAAGAACATGAAGAAGAAGAAGAGGAAATTAGCTACGATGATCTCAAGAAACGAATGTGGAAAGATCGACAAAGGTTGAAGAAGATGAAGGAGAAGCGTGATGATGAAGAGCCTGAATCCGCCGCTAGAGAAGAAGCCTCTCGCCGTAAGAAAATGGCTAGAGCTCAAGATTCAATCCTCAAGTATATGGATAAGATCATGGAAGCTTGTAAGGCACAAGGGTTTGTTTATGGCATCGTCCCCGAAAAGGGTAAGCCCGTCACCGGCTCCTCCGAGAGCCTCCGTGAGTGGTGGCGGAATGACGTCCGATTCGAACAAGATGCTCCCATGGCCATAGCAAAATTCCTCCCCAAAGTAATCGAAGAATCAGGGCTCGATCCCAATTCGTTTTTGCACCTACTCACCGATTTACAGGACACAACATTAGGCTCCATTCTCTCTGCTCTGATGCAGCACTGTATTCCCCCGCAGAGGAAATTCCCACTGGAGAAGGGTTTAGCGCCGCCGTGGTGGCCGACGGGTAACGAGCTTTGGTGGGGAGAACAGGGTCCCGCCGGCGGGCATGGTGTTCCGCCGTACAAAAAGCCCCACGACCTCAAAAAGGCTTGGAAAATCAGTGTCCTGGCGGCGGTGATCAAACACATGTCCCCTGATATGGACAACATGAGGAAATTAGTTCGGCAATCGAAGAATTTACAAGCAAAAATGACGGCAAAAGAGACGCTTACTTGGGCTAAGGTAGTGAATCAAGAAGAAGCCCTGTCACAACTAACCAGAAAAAAACTCAAAATCACACCCGACGTAGAAGAAGAAGAAGAAGAAAAAGAACACGAGAAAAACAGAGGCGAACAGGGCACGGATGGAATTATGGAGAAACGAAAGTGCATATTCGAAGAAGAAGCTGTAGCCGATTCGATACTGTACCCATGCCAGAATCAATGGTGTCCACAGAGCGAGGTGCTGATGGGATTCATGGACAAGAACGCAAGAACAGAGCATGAGACGCAGTGCATTTACAGAGGCGGGCAGACGGCGGAACAAGAACAATTCTCAGAGGAGCAGTCGATCGACACGCATTTGAAGAGCGTGGTGGATTGGATGAACTGGGAGTTATCAAGAGCAGAGCCGGGCAGCGACGAGGCAAGGATCGAAGATGCCGGAGACGGGTCGGGCAGCAGCACGGTGGAGGATTACTGGAATGGCGGCGCGGTGGAGGAGGCGTTTGAGATGCAGAGAAGGAGTATGGATTTGAATGCGAGTCCGGCGGAGGATTTGGGTGCCCAACAAGATGCCACTTCCATTTGGGATTTGAGATACGAATGGGCTGAGGAATGA 1386 50.29 MMVEFHGEIRDPNDGEDQEHEEEEEEISYDDLKKRMWKDRQRLKKMKEKRDDEEPESAAREEASRRKKMARAQDSILKYMDKIMEACKAQGFVYGIVPEKGKPVTGSSESLREWWRNDVRFEQDAPMAIAKFLPKVIEESGLDPNSFLHLLTDLQDTTLGSILSALMQHCIPPQRKFPLEKGLAPPWWPTGNELWWGEQGPAGGHGVPPYKKPHDLKKAWKISVLAAVIKHMSPDMDNMRKLVRQSKNLQAKMTAKETLTWAKVVNQEEALSQLTRKKLKITPDVEEEEEEKEHEKNRGEQGTDGIMEKRKCIFEEEAVADSILYPCQNQWCPQSEVLMGFMDKNARTEHETQCIYRGGQTAEQEQFSEEQSIDTHLKSVVDWMNWELSRAEPGSDEARIEDAGDGSGSSTVEDYWNGGAVEEAFEMQRRSMDLNASPAEDLGAQQDATSIWDLRYEWAEE 461
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 23914508 23915893 + ClG42_07g0096100.10 Clacu07g0961 253559
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu07g0961 461 FunFam Ethylene insensitive 3-like 1 142 279 - -
Clacu07g0961 461 MobiDBLite consensus disorder prediction 44 67 - -
Clacu07g0961 461 MobiDBLite consensus disorder prediction 282 303 - -
Clacu07g0961 461 Gene3D - 58 141 IPR023278 GO:0003700(InterPro)|GO:0005634(InterPro)
Clacu07g0961 461 Gene3D - 142 278 IPR023278 GO:0003700(InterPro)|GO:0005634(InterPro)
Clacu07g0961 461 MobiDBLite consensus disorder prediction 391 412 - -
Clacu07g0961 461 PANTHER ETHYLENE INSENSITIVE 3-LIKE 2 PROTEIN 14 390 IPR006957 GO:0003677(PANTHER)|GO:0003700(InterPro)|GO:0003700(PANTHER)|GO:0005634(InterPro)
Clacu07g0961 461 SUPERFAMILY DNA-binding domain of EIN3-like 148 271 IPR023278 GO:0003700(InterPro)|GO:0005634(InterPro)
Clacu07g0961 461 Coils Coil 29 49 - -
Clacu07g0961 461 Pfam Ethylene insensitive 3, DNA-binding domain 30 269 IPR047091 GO:0003700(InterPro)
Clacu07g0961 461 MobiDBLite consensus disorder prediction 1 67 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu07g0961 Clacu-Chr7:23914508 Clacu08g1013 Clacu-Chr8:20162505 3.90E-80 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
48039 PF04873 EIN3 3.00E-110 No_clan Clacu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu07g0961 K14514 - csv:116406095 717.227