Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu07g0961 ATGATGGTGGAGTTCCATGGAGAAATCCGAGACCCCAACGATGGTGAAGACCAAGAACATGAAGAAGAAGAAGAGGAAATTAGCTACGATGATCTCAAGAAACGAATGTGGAAAGATCGACAAAGGTTGAAGAAGATGAAGGAGAAGCGTGATGATGAAGAGCCTGAATCCGCCGCTAGAGAAGAAGCCTCTCGCCGTAAGAAAATGGCTAGAGCTCAAGATTCAATCCTCAAGTATATGGATAAGATCATGGAAGCTTGTAAGGCACAAGGGTTTGTTTATGGCATCGTCCCCGAAAAGGGTAAGCCCGTCACCGGCTCCTCCGAGAGCCTCCGTGAGTGGTGGCGGAATGACGTCCGATTCGAACAAGATGCTCCCATGGCCATAGCAAAATTCCTCCCCAAAGTAATCGAAGAATCAGGGCTCGATCCCAATTCGTTTTTGCACCTACTCACCGATTTACAGGACACAACATTAGGCTCCATTCTCTCTGCTCTGATGCAGCACTGTATTCCCCCGCAGAGGAAATTCCCACTGGAGAAGGGTTTAGCGCCGCCGTGGTGGCCGACGGGTAACGAGCTTTGGTGGGGAGAACAGGGTCCCGCCGGCGGGCATGGTGTTCCGCCGTACAAAAAGCCCCACGACCTCAAAAAGGCTTGGAAAATCAGTGTCCTGGCGGCGGTGATCAAACACATGTCCCCTGATATGGACAACATGAGGAAATTAGTTCGGCAATCGAAGAATTTACAAGCAAAAATGACGGCAAAAGAGACGCTTACTTGGGCTAAGGTAGTGAATCAAGAAGAAGCCCTGTCACAACTAACCAGAAAAAAACTCAAAATCACACCCGACGTAGAAGAAGAAGAAGAAGAAAAAGAACACGAGAAAAACAGAGGCGAACAGGGCACGGATGGAATTATGGAGAAACGAAAGTGCATATTCGAAGAAGAAGCTGTAGCCGATTCGATACTGTACCCATGCCAGAATCAATGGTGTCCACAGAGCGAGGTGCTGATGGGATTCATGGACAAGAACGCAAGAACAGAGCATGAGACGCAGTGCATTTACAGAGGCGGGCAGACGGCGGAACAAGAACAATTCTCAGAGGAGCAGTCGATCGACACGCATTTGAAGAGCGTGGTGGATTGGATGAACTGGGAGTTATCAAGAGCAGAGCCGGGCAGCGACGAGGCAAGGATCGAAGATGCCGGAGACGGGTCGGGCAGCAGCACGGTGGAGGATTACTGGAATGGCGGCGCGGTGGAGGAGGCGTTTGAGATGCAGAGAAGGAGTATGGATTTGAATGCGAGTCCGGCGGAGGATTTGGGTGCCCAACAAGATGCCACTTCCATTTGGGATTTGAGATACGAATGGGCTGAGGAATGA 1386 50.29 MMVEFHGEIRDPNDGEDQEHEEEEEEISYDDLKKRMWKDRQRLKKMKEKRDDEEPESAAREEASRRKKMARAQDSILKYMDKIMEACKAQGFVYGIVPEKGKPVTGSSESLREWWRNDVRFEQDAPMAIAKFLPKVIEESGLDPNSFLHLLTDLQDTTLGSILSALMQHCIPPQRKFPLEKGLAPPWWPTGNELWWGEQGPAGGHGVPPYKKPHDLKKAWKISVLAAVIKHMSPDMDNMRKLVRQSKNLQAKMTAKETLTWAKVVNQEEALSQLTRKKLKITPDVEEEEEEKEHEKNRGEQGTDGIMEKRKCIFEEEAVADSILYPCQNQWCPQSEVLMGFMDKNARTEHETQCIYRGGQTAEQEQFSEEQSIDTHLKSVVDWMNWELSRAEPGSDEARIEDAGDGSGSSTVEDYWNGGAVEEAFEMQRRSMDLNASPAEDLGAQQDATSIWDLRYEWAEE 461
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 23914508 23915893 + ClG42_07g0096100.10 Clacu07g0961 253559

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Clacu07g0961 461 FunFam Ethylene insensitive 3-like 1 142 279 - -
Clacu07g0961 461 MobiDBLite consensus disorder prediction 44 67 - -
Clacu07g0961 461 MobiDBLite consensus disorder prediction 282 303 - -
Clacu07g0961 461 Gene3D - 58 141 IPR023278 GO:0003700(InterPro)|GO:0005634(InterPro)
Clacu07g0961 461 Gene3D - 142 278 IPR023278 GO:0003700(InterPro)|GO:0005634(InterPro)
Clacu07g0961 461 MobiDBLite consensus disorder prediction 391 412 - -
Clacu07g0961 461 PANTHER ETHYLENE INSENSITIVE 3-LIKE 2 PROTEIN 14 390 IPR006957 GO:0003677(PANTHER)|GO:0003700(InterPro)|GO:0003700(PANTHER)|GO:0005634(InterPro)
Clacu07g0961 461 SUPERFAMILY DNA-binding domain of EIN3-like 148 271 IPR023278 GO:0003700(InterPro)|GO:0005634(InterPro)
Clacu07g0961 461 Coils Coil 29 49 - -
Clacu07g0961 461 Pfam Ethylene insensitive 3, DNA-binding domain 30 269 IPR047091 GO:0003700(InterPro)
Clacu07g0961 461 MobiDBLite consensus disorder prediction 1 67 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu07g0961 K14514 - - csv:116406095 717.227
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu07g0961 Clacu-Chr7:23914508 Clacu08g1013 Clacu-Chr8:20162505 3.90E-80 dispersed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Clacu03g1455 . 2 626 EIL Transcription Factor Family AT2G27050 58.2 1.2e-190 663.3
Clacu08g1013 . 8 495 EIL Transcription Factor Family AT2G27050 62.8 1.4e-167 586.6
Clacu03g1384 . 15 310 EIL Transcription Factor Family AT2G27050 61.8 7.3e-100 361.7
Clacu03g1384 . 2 562 EIL Transcription Factor Family AT1G73730 55.7 1.1e-153 540.4
Clacu03g1455 . 36 334 EIL Transcription Factor Family AT1G73730 62.5 7.2e-105 378.3
Clacu08g1013 . 40 335 EIL Transcription Factor Family AT1G73730 61.3 2.3e-103 373.2
Clacu07g0961 . 27 273 EIL Transcription Factor Family AT1G73730 54.3 8.9e-71 265.0
Clacu03g1455 . 3 626 EIL Transcription Factor Family AT3G20770 62.5 1.3e-211 733.0
Clacu08g1013 . 7 493 EIL Transcription Factor Family AT3G20770 63.7 2.2e-171 599.4
Clacu03g1384 . 9 276 EIL Transcription Factor Family AT3G20770 68.5 4.0e-104 375.9
Clacu07g0961 . 27 364 EIL Transcription Factor Family AT5G65100 50.6 3.4e-94 342.8
Clacu03g1384 . 19 272 EIL Transcription Factor Family AT5G65100 50.5 2.1e-72 270.4
Clacu07g0961 . 27 364 EIL Transcription Factor Family AT5G10120 54.2 5.2e-96 348.6
Clacu03g1384 . 11 274 EIL Transcription Factor Family AT5G10120 53.9 1.7e-75 280.4
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012054 0 1 0 0 0 1 2 2 1 1 1 1 2 1 1 2 1 0 2 1 1 2 0 0 1 1 1 2 1 0 29
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
48039 PF04873 EIN3 3.00E-110 No_clan Clacu TF