Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu07g1001 ATGGAGTTTCCAATTTCTCTATTCAGGATTCTCGCCTTTCTTCTTCTCTGGATTTTGCTGTGCCATGGATTTGGATCCGACGCTCAGCTTTTGCCTGAATCCGAAGTGAAAACCCTTCAAACAATATCTTCAAAACTAAAGAATCTAAGCTGGAATGTAACCCGGAGTTCTTGCATTCGAGGCGAAGGCTTTTCCAATCAAGCTTTCCTGGGGAACCAAATATTGAGGAATGTCTCATGCAATTGTACTTCCACTCTTTGTCATGTGACAATTATCCTGCTTAAGGGTCTCAATGTAACAGGAACTTTTCCAGCTGAATTTGGTAATCTTACTCATCTGCAGGAACTTGATCTTACTCGCAACCATATTATTGGCCAGCTACCCAGTAGTCTTGCCAATGCTCCTCTAGTCAAACTTTCTCTCTTGGGAAACAGGCTAAACGGTTCAATTCCCAAGGAAATTGGTGACATTGGCACACTCGAAGAGCTGGTCTTGGAAGACAACCAGCTAACTGGAAGTCTACCTGCCAGCCTTGGAAATCTGCACGGTTTGAGAAGACTGCTTCTGTCTGCAAACAATTTCACAGGAAAAATACCAGACTCATTTGGAAACTTAAAGAACTTGGTCGATTTTAGGATAGACGGGAATGGGCTGTCTGGGAAGATTCCTGAATTCATTGGGAATTTGATCAACCTCGACAGACTGGATATACAAGGAACATCGATGGAAAATCCCATTCCTTCGACAATATCTCAATTGAAGAACCTGACTCAATTGAGGATATCTGACTTGAAGGGATCATTTATAAGTTTCCCCGATTTGACTGATATGATAAACATGGAGGAATTGGTCCTGAGGAACTGTTTAATTAATGGCTCAATCCCCGAGTATATTGGAGAAATGAACAAATTATCAACTCTAGATCTAAGCTTCAACCATTTAACTGGTCCAATTCCTGAGACATTTCAGAATCTGATGAAGAAAAAGATAGACTTCATGTTTCTGACAAACAACTCACTGAGTGGTGAAGTGCCTGGTTGGATCTTGAGTAGCAAAAAGAACATAGATTTGTCTTACAACAACTTTTCAGGGTCTACTCTTGCTAGTTGCCAACAATCACCTGTGAACTTGATTGCGAGTTACCCACCTGCAGTGAATCATCAAGTTCCTTGGTGCCTCAAGAAAGACCTTCCATGCTCTGGAAAAGCTGAATATCATTCCTTGTTTATTAATTGTGGAGGAACTAGATTGACGGCTGATGGGCATGATTATGAAGAGGACTTAACTACAGAAGGCAAGTCAAACTTCTTTTCTGTTTCAGAAAAATGGGCTTACAGCAGTACAGGAGTTTTTTTGGGTGATGAAAATGCTGACTATATAGCTTCAAATAAGCTTGGCCTGAATGTGAGTGGTCCACGGTATTATCAAAATGCTCGACTTTCCCCTCTCTCCCTCAAATATTATGGCCTTTGCCTGCGGAGCGGAAGCTACAATGTGAAGCTCCACTTTGCTGAAATTATGTACACTAATGATCAAACTTTTAGCAGCCTGGGAAAGCGTATATTCGATATATCAATTCAAGGAAAACTAGTGAAGAAGGATTTCAATATTATGGAGGCATCTGGGGGTGTTGGTAAGAACTTCACAGTGGAAGATAAAAATGTTCTTGTCAATGGCAGTACCCTTGAGATTCATCTATATTGGGCTGGTAAAGGAACCACAGCTGTGCCAGACAGAGGAGTTTATGGACCCCTTATTTCTGCTATCACAGTTACGCCAAACTTTGAAATCAATGAGGGAGGTCTATCAGCTGGGGCACTTGCCGGCATCATAATTTCTTCATGTGCAGTAGTCATCATACTGGTTGTAGTATTTCTTTGGATGACAGGTTACATATGTAAGAAGGAAGTCCTAGATAATGAACTTTCTGGTGTAGATTTACAAACGGGTCATTTTACCTTGAAACAAATTAAAGCTGCCACCAACAACTTTGATCCTAAAAGTAAAATAGGCGAAGGTGGATTTGGGCCTGTCTACAAGGGTGTACTGTCAGATGGTGCTTTGATTGCCGTGAAGCAACTCTCCTCGAAATCGAAGCAAGGGAGCCGTGAGTTTGTTACTGAGATTGGCATGATATCTGCATTGCAACACCCAAACCTTGTTAAGCTCTATGGCTGCTGCGTTGAGGGAAACCAATTGTTGCTTGTATATGAATACATGGAAAATAATAGTCTTGCCCGTGCACTTTTCGGTCGAGAGGAACAAAGGCTACATCTTGACTGGCGAACAAGGAAGAAGATATGCTTGGAAATAGCTAGGGGATTAGCTTACCTTCATGAAGAATCAAGGTTAAAAATCGTTCACAGAGACATAAAGGCCACAAACGTACTGCTCGATAAAGATCTTAATGCTAAGATTTCTGACTTTGGTTTGGCTAAGCTTGACGAAGAGGAGAACACCCACATCAGCACACGAATTGCTGGAACCATCGGTTATATGGCACCCGAGTATGCAATGAGAGGATACTTGACTGATAAGGCAGATGTTTACAGCTTTGGAATTGTTGCCTTAGAGATAGTTAGTGGGAAAAGTAACACAAATTACAGGCCAAAGGAAGAGTTTGTTTATCTTCTTGATTGGGCCTATGTACTGGAAGAGCAAGGCAACCTTCTAGAACTGGTAGATCCAGACCTTGGTTCAAATTACTCATCCGAGGAAGCAATGAGGATGCTGAACGTAGCTCTCTTATGCACCAACCCATCTCCCACTCTCAGACCCGCAATGTCTTCTGTGGTGAGTATGCTTGAGGGTAAGATTGCAGTCCAAGCACCGATCATCAAGCGCACTTCGTCCGGCCAAGATCCAAGGTTTAGAGCCTTTGAGAAGCTCTCACACGACAGCCGATCGCAGGTTTCAAGCTCAACGGTTTCGCTAGATGCTGAGCCTCAAAAAAGCATGTTAATGGATGGGCCATGTACTGATTCTTCAGTGTCCATTGATACCAATGCCAATAATCTCTATCAATCTGCATCAAGTGATCCCCTCCAGAATCATCGTCATGTGGATAATATGAAACTATCAGCTAAGTAA 3090 42.2 MEFPISLFRILAFLLLWILLCHGFGSDAQLLPESEVKTLQTISSKLKNLSWNVTRSSCIRGEGFSNQAFLGNQILRNVSCNCTSTLCHVTIILLKGLNVTGTFPAEFGNLTHLQELDLTRNHIIGQLPSSLANAPLVKLSLLGNRLNGSIPKEIGDIGTLEELVLEDNQLTGSLPASLGNLHGLRRLLLSANNFTGKIPDSFGNLKNLVDFRIDGNGLSGKIPEFIGNLINLDRLDIQGTSMENPIPSTISQLKNLTQLRISDLKGSFISFPDLTDMINMEELVLRNCLINGSIPEYIGEMNKLSTLDLSFNHLTGPIPETFQNLMKKKIDFMFLTNNSLSGEVPGWILSSKKNIDLSYNNFSGSTLASCQQSPVNLIASYPPAVNHQVPWCLKKDLPCSGKAEYHSLFINCGGTRLTADGHDYEEDLTTEGKSNFFSVSEKWAYSSTGVFLGDENADYIASNKLGLNVSGPRYYQNARLSPLSLKYYGLCLRSGSYNVKLHFAEIMYTNDQTFSSLGKRIFDISIQGKLVKKDFNIMEASGGVGKNFTVEDKNVLVNGSTLEIHLYWAGKGTTAVPDRGVYGPLISAITVTPNFEINEGGLSAGALAGIIISSCAVVIILVVVFLWMTGYICKKEVLDNELSGVDLQTGHFTLKQIKAATNNFDPKSKIGEGGFGPVYKGVLSDGALIAVKQLSSKSKQGSREFVTEIGMISALQHPNLVKLYGCCVEGNQLLLVYEYMENNSLARALFGREEQRLHLDWRTRKKICLEIARGLAYLHEESRLKIVHRDIKATNVLLDKDLNAKISDFGLAKLDEEENTHISTRIAGTIGYMAPEYAMRGYLTDKADVYSFGIVALEIVSGKSNTNYRPKEEFVYLLDWAYVLEEQGNLLELVDPDLGSNYSSEEAMRMLNVALLCTNPSPTLRPAMSSVVSMLEGKIAVQAPIIKRTSSGQDPRFRAFEKLSHDSRSQVSSSTVSLDAEPQKSMLMDGPCTDSSVSIDTNANNLYQSASSDPLQNHRHVDNMKLSAK 1029
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 24440289 24451882 - ClG42_07g0100100.10 Clacu07g1001 253599
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu07g1001 1029 FunFam Putative LRR receptor-like serine/threonine-protein kinase 740 947 - -
Clacu07g1001 1029 ProSiteProfiles Protein kinase domain profile. 664 946 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu07g1001 1029 Gene3D Transferase(Phosphotransferase) domain 1 740 947 - -
Clacu07g1001 1029 Gene3D Ribonuclease Inhibitor 162 267 IPR032675 -
Clacu07g1001 1029 SUPERFAMILY Protein kinase-like (PK-like) 647 947 IPR011009 -
Clacu07g1001 1029 SMART serkin_6 664 933 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu07g1001 1029 Pfam Leucine Rich Repeat 112 133 IPR001611 GO:0005515(InterPro)
Clacu07g1001 1029 Pfam Leucine Rich Repeat 303 325 IPR001611 GO:0005515(InterPro)
Clacu07g1001 1029 Pfam Protein tyrosine and serine/threonine kinase 667 933 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Clacu07g1001 1029 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 82 174 - -
Clacu07g1001 1029 MobiDBLite consensus disorder prediction 968 1029 - -
Clacu07g1001 1029 SUPERFAMILY L domain-like 72 325 - -
Clacu07g1001 1029 Gene3D - 405 594 - -
Clacu07g1001 1029 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 175 267 - -
Clacu07g1001 1029 Gene3D Phosphorylase Kinase; domain 1 632 739 - -
Clacu07g1001 1029 Pfam Leucine rich repeat 159 218 IPR001611 GO:0005515(InterPro)
Clacu07g1001 1029 Gene3D Ribonuclease Inhibitor 35 158 IPR032675 -
Clacu07g1001 1029 SMART LRR_typ_2 110 134 IPR003591 -
Clacu07g1001 1029 SMART LRR_typ_2 157 180 IPR003591 -
Clacu07g1001 1029 SMART LRR_typ_2 181 204 IPR003591 -
Clacu07g1001 1029 SMART LRR_typ_2 301 324 IPR003591 -
Clacu07g1001 1029 ProSitePatterns Serine/Threonine protein kinases active-site signature. 786 798 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Clacu07g1001 1029 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 272 366 - -
Clacu07g1001 1029 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 13 961 IPR051824 -
Clacu07g1001 1029 CDD STKc_IRAK 670 937 - -
Clacu07g1001 1029 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 405 594 - -
Clacu07g1001 1029 Gene3D Ribonuclease Inhibitor 268 376 IPR032675 -
Clacu07g1001 1029 MobiDBLite consensus disorder prediction 989 1017 - -
Clacu07g1001 1029 FunFam probable LRR receptor-like serine/threonine-protein kinase At1g53430 633 739 - -
Clacu07g1001 1029 Pfam Malectin domain 408 589 IPR021720 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu07g1001 Clacu-Chr7:24440289 Clacu11g1918 Clacu-Chr11:30185620 0.00E+00 dispersed
Clacu07g1001 Clacu-Chr7:24440289 Clacu11g1916 Clacu-Chr11:30145850 4.10E-215 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
73696 PF07714 PK_Tyr_Ser-Thr 2.70E-49 CL0016 Clacu PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu07g1001 - - - 0.0