Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu07g1009 ATGAAGATTCAGTGTAACGTCTGCGAGATGGCTGAGGCGACCGTTCTGTGTTGTGCTGATGAGGCGGCGCTGTGCTGGGCTTGCGACGAGAAGATTCATGCAGCCAACAAGCTCGCAAGCAAGCACCAGAGAGTTCCTCTCTCTGGCTCTTCATCTCAGATGCCTAAATGCGATATCTGCCAGGAAGCTAGTGGCTATATCTTCTGTTTAGAGGATCGAGCATTACTTTGCAGAAAGTGTGATGTTGCTATACACACAGCAAATACTTATGTAACTGGTCATCAGCGCTTTCTACTTACTGGTGTGAAAGTGGCACTCGAGCCAACTGACCCCGTTGCTTGTTCTTCCATGGATAAGTCACATTCTCGAGAGAAGTTCACTGAGACTAAAGTTAGACCACTGTCCGAAAGGGAATTCTCGATGCCTTCTCCTGATGAACTCAGTAGAAGCTTGTCTGTACTAGGTGGATCTGAGGACTTTATGGCAAATAGAACATTGCTTACCGGAGGCGGAGATTCTATTTCTGGTGGTTTTTCACAGTGGCAAATGGATGAACTTATTAATCTGACTGGATTCAATCAGAACTATGGGTATATGGATAACGGATCATCCAAGGCTGATAGTGGTAAGCTTGGGGATTCTGATTCATCACCAGTTTTGAGAGCTGCTGACATCGAACTGGACGATGACACTGAATGCTCGGGTCAGGTTCCAGAGGCTTCCTGGACAGTGCCTCAGATTCCCTCTCCACCCACAGCGTCAGGCTTATACTGGCCAAGAAGTTACCATAATTCTATGGATGGTGCTGTTTTTGTTCCTGACATCTCCTGTTCTTCAGAAAAGGTTCAACATTGCTCACATAATGGTACCTTCTCGAAACGAAGAAGACAGTTCTAG 897 46.38 MKIQCNVCEMAEATVLCCADEAALCWACDEKIHAANKLASKHQRVPLSGSSSQMPKCDICQEASGYIFCLEDRALLCRKCDVAIHTANTYVTGHQRFLLTGVKVALEPTDPVACSSMDKSHSREKFTETKVRPLSEREFSMPSPDELSRSLSVLGGSEDFMANRTLLTGGGDSISGGFSQWQMDELINLTGFNQNYGYMDNGSSKADSGKLGDSDSSPVLRAADIELDDDTECSGQVPEASWTVPQIPSPPTASGLYWPRSYHNSMDGAVFVPDISCSSEKVQHCSHNGTFSKRRRQF 298
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 24510854 24513055 - ClG42_07g0100900.10 Clacu07g1009 253607
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu07g1009 298 PANTHER B-BOX ZINC FINGER PROTEIN 22 1 280 IPR051979 GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0009640(PANTHER)
Clacu07g1009 298 CDD Bbox1_BBX-like 56 99 IPR049808 -
Clacu07g1009 298 FunFam B-box zinc finger protein 22 1 93 - -
Clacu07g1009 298 CDD Bbox1_BBX-like 5 47 IPR049808 -
Clacu07g1009 298 ProSiteProfiles Zinc finger B-box type profile. 52 99 IPR000315 GO:0008270(InterPro)
Clacu07g1009 298 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270(InterPro)
Clacu07g1009 298 Pfam B-box zinc finger 3 47 IPR000315 GO:0008270(InterPro)
Clacu07g1009 298 Pfam B-box zinc finger 53 96 IPR000315 GO:0008270(InterPro)
Clacu07g1009 298 Gene3D Classic Zinc Finger 1 92 - -
Clacu07g1009 298 SMART bboxneu5 4 47 IPR000315 GO:0008270(InterPro)
Clacu07g1009 298 SMART bboxneu5 52 99 IPR000315 GO:0008270(InterPro)
Clacu07g1009 298 MobiDBLite consensus disorder prediction 125 146 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu01g2073 Clacu-Chr1:32478251 Clacu07g1009 Clacu-Chr7:24510854 6.30E-20 dispersed
Clacu06g0097 Clacu-Chr6:1063289 Clacu07g1009 Clacu-Chr7:24510854 9.70E-35 dispersed
Clacu07g0830 Clacu-Chr7:21083117 Clacu07g1009 Clacu-Chr7:24510854 2.20E-21 dispersed
Clacu07g1009 Clacu-Chr7:24510854 Clacu08g1617 Clacu-Chr8:25959372 5.30E-30 dispersed
Clacu07g1009 Clacu-Chr7:24510854 Clacu11g0546 Clacu-Chr11:5147407 2.40E-30 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
48043 PF00643 zf-B_box 3.60E-07 No_clan Clacu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu07g1009 - - - 0.0