Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu07g1009 ATGAAGATTCAGTGTAACGTCTGCGAGATGGCTGAGGCGACCGTTCTGTGTTGTGCTGATGAGGCGGCGCTGTGCTGGGCTTGCGACGAGAAGATTCATGCAGCCAACAAGCTCGCAAGCAAGCACCAGAGAGTTCCTCTCTCTGGCTCTTCATCTCAGATGCCTAAATGCGATATCTGCCAGGAAGCTAGTGGCTATATCTTCTGTTTAGAGGATCGAGCATTACTTTGCAGAAAGTGTGATGTTGCTATACACACAGCAAATACTTATGTAACTGGTCATCAGCGCTTTCTACTTACTGGTGTGAAAGTGGCACTCGAGCCAACTGACCCCGTTGCTTGTTCTTCCATGGATAAGTCACATTCTCGAGAGAAGTTCACTGAGACTAAAGTTAGACCACTGTCCGAAAGGGAATTCTCGATGCCTTCTCCTGATGAACTCAGTAGAAGCTTGTCTGTACTAGGTGGATCTGAGGACTTTATGGCAAATAGAACATTGCTTACCGGAGGCGGAGATTCTATTTCTGGTGGTTTTTCACAGTGGCAAATGGATGAACTTATTAATCTGACTGGATTCAATCAGAACTATGGGTATATGGATAACGGATCATCCAAGGCTGATAGTGGTAAGCTTGGGGATTCTGATTCATCACCAGTTTTGAGAGCTGCTGACATCGAACTGGACGATGACACTGAATGCTCGGGTCAGGTTCCAGAGGCTTCCTGGACAGTGCCTCAGATTCCCTCTCCACCCACAGCGTCAGGCTTATACTGGCCAAGAAGTTACCATAATTCTATGGATGGTGCTGTTTTTGTTCCTGACATCTCCTGTTCTTCAGAAAAGGTTCAACATTGCTCACATAATGGTACCTTCTCGAAACGAAGAAGACAGTTCTAG 897 46.38 MKIQCNVCEMAEATVLCCADEAALCWACDEKIHAANKLASKHQRVPLSGSSSQMPKCDICQEASGYIFCLEDRALLCRKCDVAIHTANTYVTGHQRFLLTGVKVALEPTDPVACSSMDKSHSREKFTETKVRPLSEREFSMPSPDELSRSLSVLGGSEDFMANRTLLTGGGDSISGGFSQWQMDELINLTGFNQNYGYMDNGSSKADSGKLGDSDSSPVLRAADIELDDDTECSGQVPEASWTVPQIPSPPTASGLYWPRSYHNSMDGAVFVPDISCSSEKVQHCSHNGTFSKRRRQF 298
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 24510854 24513055 - ClG42_07g0100900.10 Clacu07g1009 253607

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Clacu07g1009 298 PANTHER B-BOX ZINC FINGER PROTEIN 22 1 280 IPR051979 GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0009640(PANTHER)
Clacu07g1009 298 CDD Bbox1_BBX-like 56 99 IPR049808 -
Clacu07g1009 298 FunFam B-box zinc finger protein 22 1 93 - -
Clacu07g1009 298 CDD Bbox1_BBX-like 5 47 IPR049808 -
Clacu07g1009 298 ProSiteProfiles Zinc finger B-box type profile. 52 99 IPR000315 GO:0008270(InterPro)
Clacu07g1009 298 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270(InterPro)
Clacu07g1009 298 Pfam B-box zinc finger 3 47 IPR000315 GO:0008270(InterPro)
Clacu07g1009 298 Pfam B-box zinc finger 53 96 IPR000315 GO:0008270(InterPro)
Clacu07g1009 298 Gene3D Classic Zinc Finger 1 92 - -
Clacu07g1009 298 SMART bboxneu5 4 47 IPR000315 GO:0008270(InterPro)
Clacu07g1009 298 SMART bboxneu5 52 99 IPR000315 GO:0008270(InterPro)
Clacu07g1009 298 MobiDBLite consensus disorder prediction 125 146 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu07g1009 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu01g2073 Clacu-Chr1:32478251 Clacu07g1009 Clacu-Chr7:24510854 6.30E-20 dispersed
Clacu06g0097 Clacu-Chr6:1063289 Clacu07g1009 Clacu-Chr7:24510854 9.70E-35 dispersed
Clacu07g0830 Clacu-Chr7:21083117 Clacu07g1009 Clacu-Chr7:24510854 2.20E-21 dispersed
Clacu07g1009 Clacu-Chr7:24510854 Clacu08g1617 Clacu-Chr8:25959372 5.30E-30 dispersed
Clacu07g1009 Clacu-Chr7:24510854 Clacu11g0546 Clacu-Chr11:5147407 2.40E-30 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Clacu08g1548 . 6 337 C2C2-CO-like Transcription Factor Family AT5G15850 50.6 1.6e-41 167.2
Clacu08g1548 . 1 337 C2C2-CO-like Transcription Factor Family AT5G24930 61.7 3.5e-84 308.9
Clacu06g1404 . 20 375 C2C2-CO-like Transcription Factor Family AT5G24930 50.9 2.5e-58 223.0
Clacu06g1404 . 1 375 C2C2-CO-like Transcription Factor Family AT5G57660 50.8 4.5e-68 255.4
Clacu08g1548 . 2 337 C2C2-CO-like Transcription Factor Family AT5G57660 51.0 4.8e-54 208.8
Clacu02g1124 . 1 416 C2C2-CO-like Transcription Factor Family AT3G07650 54.4 8.8e-91 330.9
Clacu02g0307 . 83 489 C2C2-CO-like Transcription Factor Family AT3G07650 54.5 1.7e-89 326.6
Clacu02g1124 . 1 416 C2C2-CO-like Transcription Factor Family AT5G48250 54.6 2.4e-88 322.8
Clacu02g0307 . 83 489 C2C2-CO-like Transcription Factor Family AT5G48250 55.3 1.7e-86 316.6
Clacu02g1124 . 1 416 C2C2-CO-like Transcription Factor Family AT5G48250 54.6 2.4e-88 322.8
Clacu02g0307 . 83 489 C2C2-CO-like Transcription Factor Family AT5G48250 55.3 1.7e-86 316.6
Clacu02g0505 . 1 208 C2C2-CO-like Transcription Factor Family AT1G75540 54.7 8.0e-51 198.0
Clacu11g0546 . 1 184 C2C2-CO-like Transcription Factor Family AT1G75540 52.5 8.0e-43 171.4
Clacu07g1009 . 1 298 C2C2-CO-like Transcription Factor Family AT1G78600 50.6 1.8e-76 283.1
Clacu07g0830 . 1 185 C2C2-CO-like Transcription Factor Family AT2G21320 61.1 9.5e-56 213.4
Clacu01g2073 . 1 107 C2C2-CO-like Transcription Factor Family AT2G21320 81.3 5.6e-48 187.6
Clacu07g0830 . 1 186 C2C2-CO-like Transcription Factor Family AT4G38960 63.4 6.4e-58 220.7
Clacu01g2073 . 1 114 C2C2-CO-like Transcription Factor Family AT4G38960 79.1 5.4e-49 191.0
Clacu02g0505 . 1 198 C2C2-CO-like Transcription Factor Family AT4G39070 60.4 7.9e-56 214.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005660 1 1 3 2 2 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 2 1 1 39
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
48043 PF00643 zf-B_box 3.60E-07 No_clan Clacu TF