Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu07g1029 ATGGCAATTTCCCATTTAGTACCTTATTATTCGCCTCTTCTACGCTTTTCTCTCCCTTCGACAAAGCTCACTCCTCAACTCCATTCTCACAGATACCGCTTCTTCTCCCTCCGTGCTTCTATGGCGTCTTCACCTGCTCGCAAGGTTTTGGTTCCGGTTGCCAACGGCACCGAGCCGCTTGAGGCAGTCATCACCATTGACGTGCTTCGACGTGCTGGAGCTGATGTTACCGTTGCTTCCGTCGAGAATCATATTCGTGTTGATGCTGCGCATCAGATCAAGATTGTTGCGGATTCTCTCATTTCCGATTGCGCGGATACTGTTTTCGATCTCATCGCCCTTCCTGGAGGTATGCCAGGTGCTACCAGTCTTAGAGATTGTGAAGTTTTGCAGAACATAGTGAAGAAGCAAGCTGCAGATGGTCGACTTTATGCTGCCATCTGTGCTTCACCTGCAGTGGTGCTTGGATCATGGGGTTTGCTGAAAGGGTTGAAAGCCACATGCTATCCATCATTTATGGAGCAACTGGGATCTACTGCAACTGCTGTTGAATCCCGAGTACAGATTGATGGCCAAGTTGTGACAAGTCGTGGGCCTGGTACTACCTTGGAGTTTGCCGTTGCTCTGGTTGAGCAGTTGTATGGGAAAGAAAAAGCTGACGAAGTTTCTGGACCTCTGTTGTTGCGTTCCAACCATGGTCATGAATATACCATAGCTGAGCACAATCAAGTAAAGTGGACATTTGATGATGGCCCAAGGATTCTTGTACCTATAGCTAATGGTACTGAGGAAATGGAGGCTGTTATGATCATTGACATTCTTCGGAGAGCAAAAGGGAAAGTGGTGGTGGCTTCTGTTGAGGACAAACTAGAGATTCTTGCATCTCGAAAAGTTAAACTGGAGGCAGATTTACTTCTTGACGAAGCTGCTGAAAAGTCATACGATCTAATTGTTTTGCCTGGAGGGCTTGGTGGCGCGGAAGCATTTGCAAAATCTGAAAAACTGATTAATTTGCTAAAAAAGCAGGGAGAATCAAACAAACCCTATGGAGCAATATGTGCATCCCCGGCTTTGGTCTTAGAACCCCACGGCTTGCTGAAGGCTTTCCAATGGAGAATGCTTACTAGTCCAGCGAGAGAAAAAGACAACTCCAAAACACCAAATAAGAAAGCCACTGCTTTTCCTGCATTATGTGACAAATTGTCCGACAAAAGCGAAATTGAAAACAGAGTGGTGGTTGACGGAAACCTGATTACAAGCCGAGGACCTGGAACTACGATGGAATTTTCTCTGGCAATCGTGGAGAAGCTTTTTGGAAGGGATACAGCAGTTCAACTGGGAAAAACAATGCCGGCGTGGAGGTATAATCTTCTTCATTTCGGTTCGTTCAAACGCACTGTTCATCTTAAGAACCACGAATTCCACCCGCAAATTCTGAATTTTGAACTCTGTTCTTGTTGCGGTCAGAACTGTCGGAGACTTGTTGCGGTCGAGAGATTGTTGGATCAGAAGTTGAACATAATAGAAGTTGTGATGCCTTGTTTCTGTTTTAGTTCTAAAAGAAACAGAGATTCGTTGGATGCCCAAACAATTGCAGCAGTTGAAGAGATTTCAAATATTCCGAACGTTCGCTTGTACTCATACGAAGAACTTAGAAAAGCAACTGAAAATTTCAGGTCTGGAAACAAACTTGGGCAGGGAGGTTTTGGATCTGTCTACAAGGGAAGGCTCGGAAATGGAACCCTGGGTGCCATAAAGGTACTGTCCATGGATTCAAGGCAAGGGATGCGGGAGTTTTTGGCAGAAATCAATGTGATCTCAGTTATAAACCACGATAACTTGGTTACGTTGCATGGTTGTTGTGTCGAAGGGCAGCACCGGATCTTGGTCTATCCGTACCTAGAAAATAGCAGTCTTGACAAGATGCTTTTTGGTAGAGGACATGGGAATATTCAATTAAATTGGCAAACAAGGTGCAAAATATGCATTGGCATTGCACAGGGGCTAGCGTTCCTTCATGAGGAGGTTCAGCCGCATGTTATACATAGGGACATCAAGGCAAGCAATATCCTGCTTGATAAGGATTTAACCCCAAAAATTTCTGATTTTGGTCTTGCTAGACTACTCCCTGCTCACTTGACCCATGTTAGTACACGTGTTGCCGGGACAACAGGTTATCTTGCACCTGAATTTGCTATACGGGGGCAAGCGACAAGAAGAACAGATATTTATAGTTTTGGTGTCTTACTCTTGGAGATTGTTTGTGGGAGATACAACATAAATAGACGGTTTCCTGCTGAGGAACCATACCTTCTTGAAATGGTATGGGAGCATCATGAGAAAGGGCAATTGCTGGAATTGGTAGACCTATCATTACATGGAGACTATGGGACTGAGGAGGCCTGCAGATATTTAAAAGTTGGTCTTCTCTGCACCCAAGATATGCCAAAACTCCGTCCATCTATGTCGACCGTCGTCAAGATGCTAACAGGTGATATTGATATATCTGATCAAACAATATCAAGACCAGGAATGCTTTCAGAGTTCATGCTTCGAAAAGATGTACTATGCAAGAAGGGCGAGTTAACAACTGAAGACTCAGGAAAGCCAATTGATTCAACTTCATCATCAGGATACATTGACACCTCACATGCTACAATAACCTTCAATTCGATATTTGATCGTAGTAACTGA 2694 44.36 MAISHLVPYYSPLLRFSLPSTKLTPQLHSHRYRFFSLRASMASSPARKVLVPVANGTEPLEAVITIDVLRRAGADVTVASVENHIRVDAAHQIKIVADSLISDCADTVFDLIALPGGMPGATSLRDCEVLQNIVKKQAADGRLYAAICASPAVVLGSWGLLKGLKATCYPSFMEQLGSTATAVESRVQIDGQVVTSRGPGTTLEFAVALVEQLYGKEKADEVSGPLLLRSNHGHEYTIAEHNQVKWTFDDGPRILVPIANGTEEMEAVMIIDILRRAKGKVVVASVEDKLEILASRKVKLEADLLLDEAAEKSYDLIVLPGGLGGAEAFAKSEKLINLLKKQGESNKPYGAICASPALVLEPHGLLKAFQWRMLTSPAREKDNSKTPNKKATAFPALCDKLSDKSEIENRVVVDGNLITSRGPGTTMEFSLAIVEKLFGRDTAVQLGKTMPAWRYNLLHFGSFKRTVHLKNHEFHPQILNFELCSCCGQNCRRLVAVERLLDQKLNIIEVVMPCFCFSSKRNRDSLDAQTIAAVEEISNIPNVRLYSYEELRKATENFRSGNKLGQGGFGSVYKGRLGNGTLGAIKVLSMDSRQGMREFLAEINVISVINHDNLVTLHGCCVEGQHRILVYPYLENSSLDKMLFGRGHGNIQLNWQTRCKICIGIAQGLAFLHEEVQPHVIHRDIKASNILLDKDLTPKISDFGLARLLPAHLTHVSTRVAGTTGYLAPEFAIRGQATRRTDIYSFGVLLLEIVCGRYNINRRFPAEEPYLLEMVWEHHEKGQLLELVDLSLHGDYGTEEACRYLKVGLLCTQDMPKLRPSMSTVVKMLTGDIDISDQTISRPGMLSEFMLRKDVLCKKGELTTEDSGKPIDSTSSSGYIDTSHATITFNSIFDRSN 897
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 24717165 24732113 + ClG42_07g0102900.10 Clacu07g1029 253627
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu07g1029 897 SUPERFAMILY Class I glutamine amidotransferase-like 47 228 IPR029062 -
Clacu07g1029 897 SMART serkin_6 558 829 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu07g1029 897 NCBIfam DJ-1 family glyoxalase III 48 223 IPR006287 -
Clacu07g1029 897 FunFam Protein DJ-1 homolog C 41 231 - -
Clacu07g1029 897 FunFam Serine/threonine-protein kinase receptor 529 633 - -
Clacu07g1029 897 CDD GATase1_DJ-1 254 437 - -
Clacu07g1029 897 Pfam Protein tyrosine and serine/threonine kinase 561 826 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Clacu07g1029 897 FunFam Protein DJ-1 homolog C 246 454 - -
Clacu07g1029 897 Gene3D Phosphorylase Kinase; domain 1 529 633 - -
Clacu07g1029 897 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3 472 853 IPR052059 GO:0004674(PANTHER)|GO:0006468(PANTHER)
Clacu07g1029 897 SUPERFAMILY Class I glutamine amidotransferase-like 253 450 IPR029062 -
Clacu07g1029 897 CDD GATase1_DJ-1 49 213 - -
Clacu07g1029 897 Gene3D - 248 454 IPR029062 -
Clacu07g1029 897 Gene3D - 40 241 IPR029062 -
Clacu07g1029 897 Coils Coil 283 303 - -
Clacu07g1029 897 CDD STKc_IRAK 564 831 - -
Clacu07g1029 897 FunFam Putative LRR receptor-like serine/threonine-protein kinase 634 841 - -
Clacu07g1029 897 SUPERFAMILY Protein kinase-like (PK-like) 537 829 IPR011009 -
Clacu07g1029 897 ProSitePatterns Serine/Threonine protein kinases active-site signature. 680 692 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Clacu07g1029 897 ProSiteProfiles Protein kinase domain profile. 558 840 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu07g1029 897 Gene3D Transferase(Phosphotransferase) domain 1 634 840 - -
Clacu07g1029 897 Pfam DJ-1/PfpI family 47 212 IPR002818 -
Clacu07g1029 897 Pfam DJ-1/PfpI family 253 435 IPR002818 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu04g0939 Clacu-Chr4:23639879 Clacu07g1029 Clacu-Chr7:24717165 8.60E-91 dispersed
Clacu05g2748 Clacu-Chr5:34942248 Clacu07g1029 Clacu-Chr7:24717165 7.90E-79 dispersed
Clacu07g1029 Clacu-Chr7:24717165 Clacu07g1066 Clacu-Chr7:25214318 5.50E-131 dispersed
Clacu02g0640 Clacu-Chr2:6352564 Clacu07g1029 Clacu-Chr7:24717165 1.40E-97 transposed
Clacu11g1915 Clacu-Chr11:30133516 Clacu07g1029 Clacu-Chr7:24717165 2.30E-62 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
73697 PF00069 Pkinase 3.00E-43 CL0016 Clacu PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu07g1029 K03152 - csv:101212934 762.681