Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu07g1031 ATGAAGGCAATTTCACGTTCCCCGTTGCCGGAAAACTTCCTCAGACTACCAATAAAGTCAACCAATTTCCCTTCCCCACGTCTTCAATTCACAAATCCACAAAACCCTTCAAATTCTAGACCCCCACTTCCGCGTTTCTCCATCGATTCATCCAAATCTCCAACCCCACTGACCCCCGTCGGGCCACCGCCGTTGGTCGTCGTCGGCTCGGCCAATGCCGACATCTACGTGGAGATCGACCGGCTGCCGGAGGAGGGAGAGACTATCTCCGCCAGGAGTGGCCAGACTCTGGCCGGCGGGAAGGGGGCCAATCAGGCCTGCTGCGGAGGCAAGCTCGAGTACCCAACTTACTTTGTGGGTCAGGTTGGTGAGGATGCTCATGGGAAGTTGATCACGGCGGCACTTGAGGACGGTGGCGTCCGGCTTGATCATTTGGCTACTGTGGCGGAAGCGCCGACGGGCCACGCGGTGGTGATGCTGCAGTCTGGTGGGCAGAATTCTATCATCATTGTTGGTGGTGCTAATATGAATTGTTGGCCTGACGCCTTGTCTGACAGTGATTTGGAGGTTATAAGAAATGCTGGGATCGTTCTGCTTCAGAGGGAGATTCCTGATTCAGTCAATATCCAAGTTGCAAAGGCCGCCAGGAATGCTGGGGTTCCGGTTATTTTGGATGCTGGAGGAGTCGACGCCCCTATCCCACAAGAACTGCTTGACCATGTTGATATTTTTAGTCCAAATGAAAGCGAGCTAAGTCGCTTGACAGGATGCCCAACTGAAAGTTTTGAACAAATTGTACAAGCTGTAGAAAAATGCTATAAAATGGGTGTCAAGCAAGTTCTTGTAAAACTTGGGGCCAAAGGATCTGCTTTTTTTACACAAGGGGGAAAACCAATCAGACAACCAATTATATCAGCCGCGAAAGTACTTGATACTACTGGAGCTGGCGATACTTTCACCGCATCTTTTGCTGTGGCACTCGTCGAAGGAAAGTCGAAGGAGGAATGCCTGAAATTTGCTGCTGCTGCAGCCTCACTTTGTGTTCAAGTGAAGGGGGCCATTCCCAGCATGCCTGATAGGGAATCAGTGCTGAATCTCCTTCAGTCTGTTTGA 1113 51.03 MKAISRSPLPENFLRLPIKSTNFPSPRLQFTNPQNPSNSRPPLPRFSIDSSKSPTPLTPVGPPPLVVVGSANADIYVEIDRLPEEGETISARSGQTLAGGKGANQACCGGKLEYPTYFVGQVGEDAHGKLITAALEDGGVRLDHLATVAEAPTGHAVVMLQSGGQNSIIIVGGANMNCWPDALSDSDLEVIRNAGIVLLQREIPDSVNIQVAKAARNAGVPVILDAGGVDAPIPQELLDHVDIFSPNESELSRLTGCPTESFEQIVQAVEKCYKMGVKQVLVKLGAKGSAFFTQGGKPIRQPIISAAKVLDTTGAGDTFTASFAVALVEGKSKEECLKFAAAAASLCVQVKGAIPSMPDRESVLNLLQSV 370
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 24737701 24740723 + ClG42_07g0103100.10 Clacu07g1031 253629

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Clacu07g1031 370 Pfam pfkB family carbohydrate kinase 65 359 IPR011611 -
Clacu07g1031 370 FunFam Ribokinase 61 370 - -
Clacu07g1031 370 SUPERFAMILY Ribokinase-like 64 367 IPR029056 -
Clacu07g1031 370 PRINTS Ribokinase signature 67 88 IPR002139 GO:0016301(InterPro)
Clacu07g1031 370 PRINTS Ribokinase signature 166 179 IPR002139 GO:0016301(InterPro)
Clacu07g1031 370 PRINTS Ribokinase signature 94 113 IPR002139 GO:0016301(InterPro)
Clacu07g1031 370 PRINTS Ribokinase signature 236 251 IPR002139 GO:0016301(InterPro)
Clacu07g1031 370 PRINTS Ribokinase signature 280 291 IPR002139 GO:0016301(InterPro)
Clacu07g1031 370 Gene3D - 62 369 IPR029056 -
Clacu07g1031 370 MobiDBLite consensus disorder prediction 16 60 - -
Clacu07g1031 370 PANTHER SUGAR KINASE 63 369 - -
Clacu07g1031 370 CDD ribokinase 70 359 IPR011877 GO:0004747(InterPro)|GO:0006014(InterPro)
Clacu07g1031 370 MobiDBLite consensus disorder prediction 18 55 - -
Clacu07g1031 370 Hamap Ribokinase [rbsK]. 63 365 IPR011877 GO:0004747(InterPro)|GO:0006014(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu07g1031 K00852 - - csv:101213654 672.93
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g16 . . . . Bpe09g00272 . . Bma13g00918 . Cmo04g00703 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Blo10g00718 . . . . . . . . . . . . . . . . . . . . . . Cla07g00986 Cam07g1059 Cec07g1130 Cco07g1107 Clacu07g1031 Cmu07g1024 Cre07g1401 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009964 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 4 1 1 33