Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu07g1032 ATGCCGCAAGATCATCCAAAGAAGGATGCCAAAGAAATAAACTTTTTTACTGAATATGGGGATGCTAACAGATATAAGATTCTTGAAGTTGTTGGAAGGGGAAGTTATGGAGTTGTTTGTTCTGCTATTGACATGCAAACTGGGGAGAAAGTTGCAATAAAGAGAATTCATGATATTTTTGATCACGCATCTGATGCTATTCGAATCCTTCGTGAAGTTAAGTTGCTTAGATTGTTGCGGCATCCTGATATTGTTGACATCAAGCGTATTATGTTACCACCTTCTAAAAAGGAATTTAGGGACATTTATGTGGTTTTTGAGCTTATGGAATCTGATCTTCATCAAGTTATTAAAGCAAATGATGACTTGACGCGTGAACATCATCAATTTTTCCTCTATCAAATGCTACGTGCATTGAAATTCATGCATACAGCAAATGTGTATCATAGAGATCTGAAGCCGAAGAATATATTGGCAAATGCGAATTGCAAGCTTAAAATTTGTGATTTTGGGCTTGCAAGAGTTGCTTTCAGTGACACCCCAACTACTGTATTTTGGACAGACTATGTTGCTACTCGATGGTACAGAGCTCCAGAGTTGTGTGGATCATTCTGTTCCAAGTATACTCCTGCGATAGATATTTGGAGTGTCGGCTGCATATTTGCTGAGGTTTTGATGGGGAAGCCACTGTTTCCGGGTAAAAGCGTTGCCCATCAATTGGACTTGATTACTGATCTTCTTGGGACTCCCTCATTGGAAACCATTGCAGGAGTTCGGAATGAAAAGGCCAGGAAATATTTGACAGAAATGAGAAAGAAATCTGCAGTGCCATTTTCACAAAGATTTCCTAATGCAGATCCTACAGCCATCCGCTTATTGCAAAGACTATTAGCATTTGATCCAAAGGATCGACCATCGGCTGTGGAGGCTCTGGCTGATCCTTACTTTAAGGGCCTAGCTAAAGTTGAAAGAGAGCCTTCTTGTCAACCAATCTCAAGAGCGGAATTTGAGTTTGAGAGACGGAAATTAACAAGGGATGATGTGAGGGAATTGTTATACAGAGAAATATTAGAATATCATCCTCAAATTCGTGAAGATTACTTGAATGGAACTGAGACTTCAAAGCTCCTTTATCCTAGCGTTACAGGTCATTTTAAAAGCCAATTCACCTTCCACAAGGAGAATAACGGTAAAAGCGCACCTGTTTTGCCTCTAGAACGGAAACACTTCTCCCTGCCACGGTCCACTGTTTGCACAAATTTGGCTTCACCTGATCGTGAACCTGTTCGACGAAATCCCAAAGTCTTTAATAATAGTATGGGATTACCTGATAGAAAATTTGTGAATCCATCCAAGGCTCATCCTCCACCTAAAGTGCCTACTGGACGAGTTGCTGGGCCTGTCCTCCCTTATGAGCACAGAAACATAAAAGATGTTTATTCGAACCTAACGTCACAGATTAGAAGTTTGGATTTCTGA 1479 40.43 MPQDHPKKDAKEINFFTEYGDANRYKILEVVGRGSYGVVCSAIDMQTGEKVAIKRIHDIFDHASDAIRILREVKLLRLLRHPDIVDIKRIMLPPSKKEFRDIYVVFELMESDLHQVIKANDDLTREHHQFFLYQMLRALKFMHTANVYHRDLKPKNILANANCKLKICDFGLARVAFSDTPTTVFWTDYVATRWYRAPELCGSFCSKYTPAIDIWSVGCIFAEVLMGKPLFPGKSVAHQLDLITDLLGTPSLETIAGVRNEKARKYLTEMRKKSAVPFSQRFPNADPTAIRLLQRLLAFDPKDRPSAVEALADPYFKGLAKVEREPSCQPISRAEFEFERRKLTRDDVRELLYREILEYHPQIREDYLNGTETSKLLYPSVTGHFKSQFTFHKENNGKSAPVLPLERKHFSLPRSTVCTNLASPDREPVRRNPKVFNNSMGLPDRKFVNPSKAHPPPKVPTGRVAGPVLPYEHRNIKDVYSNLTSQIRSLDF 492
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 24757728 24761633 + ClG42_07g0103200.10 Clacu07g1032 253630
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu07g1032 492 FunFam Mitogen-activated protein kinase 111 339 - -
Clacu07g1032 492 SUPERFAMILY Protein kinase-like (PK-like) 20 320 IPR011009 -
Clacu07g1032 492 Gene3D Transferase(Phosphotransferase) domain 1 111 339 - -
Clacu07g1032 492 SMART serkin_6 25 316 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu07g1032 492 Pfam Protein kinase domain 25 316 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu07g1032 492 ProSitePatterns MAP kinase signature. 60 163 IPR003527 GO:0004707(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu07g1032 492 ProSitePatterns Protein kinases ATP-binding region signature. 31 54 IPR017441 GO:0005524(InterPro)
Clacu07g1032 492 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 22 357 IPR050117 GO:0004674(PANTHER)|GO:0004707(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0035556(PANTHER)
Clacu07g1032 492 ProSiteProfiles Protein kinase domain profile. 25 316 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu07g1032 492 Gene3D Phosphorylase Kinase; domain 1 40 362 - -
Clacu07g1032 492 FunFam Mitogen-activated protein kinase 14 119 - -
Clacu07g1032 492 MobiDBLite consensus disorder prediction 423 464 - -
Clacu07g1032 492 CDD STKc_TDY_MAPK 24 361 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu07g1032 Clacu-Chr7:24757728 Clacu09g2259 Clacu-Chr9:37358165 6.00E-204 dispersed
Clacu07g1032 Clacu-Chr7:24757728 Clacu02g1884 Clacu-Chr2:32334070 8.40E-206 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
73698 PF00069 Pkinase 5.20E-65 CL0016 Clacu PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu07g1032 - - - 0.0