Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu07g1033 ATGGTTGTTCGCTTGCCTGAAACTGACCATTATTACCCGGCATGGGCAGCAGTCATCCATAGAATGATTCATCCATTAAAGAACTTAAGAGGCTGTTGCAGGCAAAGCTTAAGTTGGGAGTGGCAGCCATTGCCATTGCTGCTCATTGAAGTAACTGAGATAGGCATAACCAACAGTAGGCTGGTTGCAGCTCCACCACTAAACTCCGAAGAAGCTGTAGATTTGTCGCCTACTTACAAGGCGCTTAGGCATCATACGCGGCCCATTGTTGCTTCTCAAACCAAAAGAAAATACTTTCTCTTGAGTCTTGATTTTGGAAGGCATGTTTTGGATTATGTTGCTTGTGGTTGTTCCTCCAATACTCCATTGGATCCACATACGAGTGTTTTCAACTACGAAAGCAGAAACTATTTTGAATGGCAAGTGAACTTTTGGGATTTGGCAGCTCCTTTATCTCAATGGTTGGTTGCTAAAGCTTGCGGTAATAGCTTTTGTCTGTTTCTTTTTTTTGCTAAAACAGACATTACTGGTGGTCCTCAACCGTTCTTCGATCTGAGGAAGGAGTCCAGAAGCCCAATCTCATCGACAAGTTTGTTTGAAGTTGTAGCCGATGATCTCCAGAAGCTTAACCAAAATCTCCTGTCTATGGTTGGTAAGGAGAACCCAGCCTTGGTATCTGCTGCTCAGCGGATATTTGGTGCTGGAGGGAAGAGGATGAGACCAGCTCTGGTATTCCTGGTGTCAAGAGCAACGGCCGGATTGGTTGGGTTAGAGGAACTCACTGTGGAGCATCGGAGTTTGGCAGAGATCATTGAGATGATCCACACTGCAAGCTTGATACATGATGATGTGTTAGATGATAGTGATATGAGGAGAGGGAAGGAAACCTTGCATCAATTATACGGTACCAGAGTGGCGGTGCTGGCTGGAGATTTCATGTTTGCACAGTCATCGTGGTGTCTTGCTAATCTTGAAAACCTTGAAGTCATTAAGCTTATCAGTCAGGTTATTAAAGATTTTGCAAGTGGTGAAATAAAGCAGGCGTCAAGCCTGTTTGATTGTGCGGTTGAGCTGGATGAATATTTGATCAAAAGCTATTATAAAACAGCTTCCTTGATTGCTGCTAGTACCAAAGGTGCTGCGATCTTTAGTGGGGTTGATCGGGATATGACCGAGAAAATGTACGAGTATGGAAAGAATCTTGGTCTCTCATTCCAAATTGTCGATGACATATTGGACTTTACACAATCAACAAAGCAGCTTGGGAAGCCAGCGGGAAGTGATCTGGCTAAAGGAAATCTGACAGCCCCAGTTATATTTGCTCTGGAGAGAGAGCCGAAATTGAAAGACATTATTGAATCAGAATTCAATGAGCCGGGGTCTCTCGAAGAAGCCATCCGCATAGTCAAGAGCAGTGGTGGCATTGAAAGAGCGCAGGAATTAGCTAAACAAAAGGCTGATCTTGCTATCCAAAACCTACAATGCCTTCCACAAAGTACCTTTCGGTTAGCGCTCGAGGATATGGTAACGTTTAATCTAGAACGGATCGATTAG 1554 44.08 MVVRLPETDHYYPAWAAVIHRMIHPLKNLRGCCRQSLSWEWQPLPLLLIEVTEIGITNSRLVAAPPLNSEEAVDLSPTYKALRHHTRPIVASQTKRKYFLLSLDFGRHVLDYVACGCSSNTPLDPHTSVFNYESRNYFEWQVNFWDLAAPLSQWLVAKACGNSFCLFLFFAKTDITGGPQPFFDLRKESRSPISSTSLFEVVADDLQKLNQNLLSMVGKENPALVSAAQRIFGAGGKRMRPALVFLVSRATAGLVGLEELTVEHRSLAEIIEMIHTASLIHDDVLDDSDMRRGKETLHQLYGTRVAVLAGDFMFAQSSWCLANLENLEVIKLISQVIKDFASGEIKQASSLFDCAVELDEYLIKSYYKTASLIAASTKGAAIFSGVDRDMTEKMYEYGKNLGLSFQIVDDILDFTQSTKQLGKPAGSDLAKGNLTAPVIFALEREPKLKDIIESEFNEPGSLEEAIRIVKSSGGIERAQELAKQKADLAIQNLQCLPQSTFRLALEDMVTFNLERID 517
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 24761696 24767807 + ClG42_07g0103300.10 Clacu07g1033 253631

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Clacu07g1033 517 PANTHER GERANYLGERANYL PYROPHOSPHATE SYNTHASE 188 515 - GO:0004659(PANTHER)|GO:0008299(PANTHER)|GO:0009507(PANTHER)|GO:0010236(PANTHER)
Clacu07g1033 517 NCBIfam solanesyl diphosphate synthase 193 516 - -
Clacu07g1033 517 SFLD Isoprenoid Synthase Type I 225 513 - -
Clacu07g1033 517 Gene3D Farnesyl Diphosphate Synthase 193 516 IPR008949 -
Clacu07g1033 517 Pfam Polyprenyl synthetase 223 468 IPR000092 GO:0004659(InterPro)|GO:0008299(InterPro)
Clacu07g1033 517 CDD Trans_IPPS_HT 220 515 IPR000092 GO:0004659(InterPro)|GO:0008299(InterPro)
Clacu07g1033 517 SUPERFAMILY Terpenoid synthases 196 515 IPR008949 -
Clacu07g1033 517 ProSitePatterns Polyprenyl synthases signature 2. 401 413 IPR033749 -
Clacu07g1033 517 ProSitePatterns Polyprenyl synthases signature 1. 279 293 IPR033749 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu07g1033 K05356 - - csv:101214140 661.759
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu01g2561 Clacu-Chr1:35861658 Clacu07g1033 Clacu-Chr7:24761696 1.20E-62 dispersed
Clacu02g1379 Clacu-Chr2:26957889 Clacu07g1033 Clacu-Chr7:24761696 1.60E-28 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g11 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cla07g00987 Cam07g1061 Cec07g1132 Cco07g1109 Clacu07g1033 Cmu07g1026 Cre07g1404 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006158 2 1 2 1 2 1 2 1 1 2 0 1 1 1 2 2 1 2 2 1 1 1 1 1 1 0 1 2 1 1 38