Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu07g1059 ATGAGAGTGAGGGTGGCTTTGGCAGAGAAAGGCATAAAATATGAAGGAAAAGAGGAAGATTTGAGCAACAAAAGCCCTTTGCTTTTGGAGATGAATCCTATTTACAAACAAATCCCAGTTTTGATTCACAAAGGGAAACCCATTATTGAGTCCTCTCTCATTGTTGAATATATTGATGAGGTTTGGAGTGACAATGGGGAAGCTTATACTAATTTGCTTCCTTCTCATCCTTTTGACAGAGCCCATGATAGGTTTTGGGTTGACTATGTGGACAAGAAGATTTATCCCATTGGAAGTAAGCTATGGAATAGAGAGAAGACAAAAGAGGAGAAAGAAGCAGCAGCAAAGGAATTGTTGGAGTGCTTTAAGCAGCTGGAAGAAGAGCTTGGAGAAAAAGACTATTTTGGTGGCCAAACATTTGGGATTATAGATATTGCTCTCATTCCATTTTACAGCATGTTTCTTGCATTCAAATTGCTTGGAAATTTGGATTTAGAAGTTGAATGTCCCAAGATCTTCCAATGGGTTAAGAGGTGCATTCAAAGAGAGAGTGTCTCAAACAATATGCCTGCCCAACCAGAGGTTTACGACATCGCTTTGGAATTCTTAGGACTTAAGCATCGAGATTACAGCGATCGTCTCAACGACTAA 651 39.63 MRVRVALAEKGIKYEGKEEDLSNKSPLLLEMNPIYKQIPVLIHKGKPIIESSLIVEYIDEVWSDNGEAYTNLLPSHPFDRAHDRFWVDYVDKKIYPIGSKLWNREKTKEEKEAAAKELLECFKQLEEELGEKDYFGGQTFGIIDIALIPFYSMFLAFKLLGNLDLEVECPKIFQWVKRCIQRESVSNNMPAQPEVYDIALEFLGLKHRDYSDRLND 216
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 25115744 25116906 + ClG42_07g0105900.10 Clacu07g1059 253657

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Clacu07g1059 216 SFLD Glutathione Transferase (cytosolic) 1 198 IPR040079 -
Clacu07g1059 216 SUPERFAMILY Thioredoxin-like 1 95 IPR036249 -
Clacu07g1059 216 CDD GST_C_Tau 77 202 IPR045074 GO:0004364(InterPro)|GO:0006749(InterPro)
Clacu07g1059 216 ProSiteProfiles Soluble glutathione S-transferase C-terminal domain profile. 76 202 IPR010987 -
Clacu07g1059 216 ProSiteProfiles Soluble glutathione S-transferase N-terminal domain profile. 1 66 IPR004045 -
Clacu07g1059 216 Gene3D Glutaredoxin 1 75 - -
Clacu07g1059 216 Pfam Glutathione S-transferase, C-terminal domain 100 183 IPR004046 -
Clacu07g1059 216 Coils Coil 108 128 - -
Clacu07g1059 216 Pfam Glutathione S-transferase, N-terminal domain 1 60 IPR004045 -
Clacu07g1059 216 CDD GST_N_Tau 1 62 - -
Clacu07g1059 216 SFLD Main.3: Omega- and Tau-like 1 198 IPR045073 -
Clacu07g1059 216 SUPERFAMILY GST C-terminal domain-like 61 202 IPR036282 -
Clacu07g1059 216 Gene3D - 76 206 - -
Clacu07g1059 216 PANTHER GLUTATHIONE S-TRANSFERASE, GST, SUPERFAMILY, GST DOMAIN CONTAINING 1 197 IPR045073 GO:0004364(PANTHER)|GO:0005737(PANTHER)|GO:0006749(PANTHER)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu07g1059 K00799 - - mdm:103427999 261.536
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu07g1057 Clacu-Chr7:25108832 Clacu07g1059 Clacu-Chr7:25115744 6.90E-59 dispersed
Clacu07g1058 Clacu-Chr7:25111282 Clacu07g1059 Clacu-Chr7:25115744 1.80E-59 tandem
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Clacu09g0599 . 1 210 Glutathione S-transferase Gene Family AT4G02520 60.1 4.8e-65 244.6
Clacu09g0601 . 1 209 Glutathione S-transferase Gene Family AT4G02520 58.0 6.2e-65 244.2
Clacu09g0600 . 1 209 Glutathione S-transferase Gene Family AT4G02520 55.7 1.1e-58 223.4
Clacu09g0599 . 1 211 Glutathione S-transferase Gene Family AT2G02930 61.2 2.5e-66 248.8
Clacu09g0601 . 1 210 Glutathione S-transferase Gene Family AT2G02930 58.2 1.8e-64 242.7
Clacu09g0600 . 1 210 Glutathione S-transferase Gene Family AT2G02930 56.3 1.0e-59 226.9
Clacu09g0601 . 5 206 Glutathione S-transferase Gene Family AT1G02950 53.7 1.5e-60 229.9
Clacu09g0599 . 6 215 Glutathione S-transferase Gene Family AT1G02950 55.0 1.6e-59 226.5
Clacu09g0600 . 5 206 Glutathione S-transferase Gene Family AT1G02950 51.7 3.3e-52 202.2
Clacu09g0599 . 1 211 Glutathione S-transferase Gene Family AT1G02930 58.8 5.2e-64 241.1
Clacu09g0601 . 1 210 Glutathione S-transferase Gene Family AT1G02930 55.7 2.2e-62 235.7
Clacu09g0600 . 1 210 Glutathione S-transferase Gene Family AT1G02930 52.9 1.0e-56 216.9
Clacu09g0599 . 1 211 Glutathione S-transferase Gene Family AT1G02920 60.2 2.1e-65 245.7
Clacu09g0601 . 1 210 Glutathione S-transferase Gene Family AT1G02920 56.2 2.0e-63 239.2
Clacu09g0600 . 1 210 Glutathione S-transferase Gene Family AT1G02920 54.3 1.1e-58 223.4
Clacu09g0601 . 1 215 Glutathione S-transferase Gene Family AT2G47730 58.3 2.6e-68 255.8
Clacu09g0599 . 4 215 Glutathione S-transferase Gene Family AT2G47730 58.7 7.0e-66 247.7
Clacu09g0600 . 1 214 Glutathione S-transferase Gene Family AT2G47730 55.8 1.4e-61 233.4
Clacu09g0602 . 1 214 Glutathione S-transferase Gene Family AT3G62760 57.5 4.9e-73 271.2
Clacu09g0599 . 20 215 Glutathione S-transferase Gene Family AT1G49860 51.5 2.2e-48 189.5
Clacu04g0811 . 3 214 Glutathione S-transferase Gene Family AT3G09270 53.8 5.6e-64 241.1
Clacu04g0814 . 3 216 Glutathione S-transferase Gene Family AT3G09270 53.0 8.0e-63 237.3
Clacu04g0803 . 224 421 Glutathione S-transferase Gene Family AT3G09270 52.8 6.0e-58 221.1
Clacu05g0286 . 2 213 Glutathione S-transferase Gene Family AT3G09270 50.9 1.3e-57 219.9
Clacu04g0815 . 3 212 Glutathione S-transferase Gene Family AT3G09270 53.8 3.3e-56 215.3
Clacu07g1056 . 1 214 Glutathione S-transferase Gene Family AT1G78380 71.0 5.4e-88 320.9
Clacu07g1058 . 1 216 Glutathione S-transferase Gene Family AT1G78380 70.4 1.2e-87 319.7
Clacu07g1057 . 1 217 Glutathione S-transferase Gene Family AT1G78380 66.8 9.9e-82 300.1
Clacu01g0854 . 4 203 Glutathione S-transferase Gene Family AT1G78380 59.0 2.4e-64 242.3
Clacu07g1059 . 1 201 Glutathione S-transferase Gene Family AT1G78380 51.7 2.7e-55 212.2
Clacu07g1056 . 7 214 Glutathione S-transferase Gene Family AT1G78370 65.4 5.4e-80 294.3
Clacu07g1058 . 7 214 Glutathione S-transferase Gene Family AT1G78370 62.0 1.5e-74 276.2
Clacu07g1057 . 7 216 Glutathione S-transferase Gene Family AT1G78370 56.2 3.3e-69 258.5
Clacu01g0854 . 7 203 Glutathione S-transferase Gene Family AT1G78370 56.3 9.5e-61 230.3
Clacu07g1056 . 1 214 Glutathione S-transferase Gene Family AT1G78340 64.5 2.4e-80 295.4
Clacu07g1058 . 1 216 Glutathione S-transferase Gene Family AT1G78340 64.4 9.2e-80 293.5
Clacu07g1057 . 1 217 Glutathione S-transferase Gene Family AT1G78340 59.4 7.5e-74 273.9
Clacu01g0854 . 4 203 Glutathione S-transferase Gene Family AT1G78340 55.5 8.6e-62 233.8
Clacu07g1059 . 1 199 Glutathione S-transferase Gene Family AT1G78340 50.3 1.9e-53 206.1
Clacu07g1056 . 1 216 Glutathione S-transferase Gene Family AT1G78320 53.7 6.5e-61 230.7
Clacu07g1056 . 1 218 Glutathione S-transferase Gene Family AT1G17180 70.2 9.0e-91 330.1
Clacu07g1058 . 1 219 Glutathione S-transferase Gene Family AT1G17180 63.9 2.4e-83 305.4
Clacu07g1057 . 1 220 Glutathione S-transferase Gene Family AT1G17180 60.9 1.2e-79 293.1
Clacu01g0854 . 4 203 Glutathione S-transferase Gene Family AT1G17180 57.0 7.9e-63 237.3
Clacu07g1059 . 1 195 Glutathione S-transferase Gene Family AT1G17180 51.8 1.4e-56 216.5
Clacu07g1056 . 2 217 Glutathione S-transferase Gene Family AT1G17190 58.8 1.8e-75 279.3
Clacu07g1058 . 2 217 Glutathione S-transferase Gene Family AT1G17190 56.9 1.1e-72 270.0
Clacu07g1057 . 2 218 Glutathione S-transferase Gene Family AT1G17190 53.5 4.8e-68 254.6
Clacu07g1059 . 1 185 Glutathione S-transferase Gene Family AT1G17190 53.5 1.2e-50 196.8
Clacu07g1056 . 3 214 Glutathione S-transferase Gene Family AT3G43800 59.3 1.1e-72 270.0
Clacu07g1058 . 3 214 Glutathione S-transferase Gene Family AT3G43800 56.9 6.9e-70 260.8
Clacu07g1057 . 3 212 Glutathione S-transferase Gene Family AT3G43800 51.6 9.6e-64 240.4
Clacu01g0854 . 1 203 Glutathione S-transferase Gene Family AT3G43800 51.0 3.0e-57 218.8
Clacu07g1056 . 1 218 Glutathione S-transferase Gene Family AT1G53680 58.3 6.1e-71 264.2
Clacu07g1058 . 2 219 Glutathione S-transferase Gene Family AT1G53680 56.4 6.3e-68 254.2
Clacu01g0854 . 1 201 Glutathione S-transferase Gene Family AT1G53680 56.6 4.1e-59 224.9
Clacu07g1059 . 1 201 Glutathione S-transferase Gene Family AT1G53680 51.5 1.3e-52 203.4
Clacu02g0037 . 55 221 Glutathione S-transferase Gene Family AT2G02390 68.3 9.9e-62 233.4
Clacu05g0258 . 742 905 Glutathione S-transferase Gene Family AT2G02390 51.5 6.5e-45 177.6
Clacu02g0037 . 12 224 Glutathione S-transferase Gene Family AT2G02380 64.3 1.3e-76 283.1
Clacu05g0258 . 699 904 Glutathione S-transferase Gene Family AT2G02380 53.1 1.3e-57 219.9
Clacu07g0801 . 101 337 Glutathione S-transferase Gene Family AT5G41210 67.9 3.1e-92 335.1
Clacu07g0801 . 101 337 Glutathione S-transferase Gene Family AT5G41240 66.2 3.5e-89 326.2
Clacu10g2039 . 1 235 Glutathione S-transferase Gene Family AT5G02780 67.4 6.9e-89 323.9
Clacu10g2038 . 13 232 Glutathione S-transferase Gene Family AT5G02780 68.9 2.5e-83 305.4
Clacu02g1410 . 75 294 Glutathione S-transferase Gene Family AT5G02780 65.8 3.4e-80 295.0
Clacu02g1410 . 29 292 Glutathione S-transferase Gene Family AT3G55040 61.1 1.1e-85 313.5
Clacu10g2039 . 6 233 Glutathione S-transferase Gene Family AT3G55040 61.0 1.0e-78 290.4
Clacu10g2038 . 3 230 Glutathione S-transferase Gene Family AT3G55040 59.0 1.2e-77 287.0
Clacu10g2039 . 1 235 Glutathione S-transferase Gene Family AT5G02790 69.4 1.4e-94 342.8
Clacu10g2038 . 7 232 Glutathione S-transferase Gene Family AT5G02790 69.2 1.8e-89 325.9
Clacu02g1410 . 67 294 Glutathione S-transferase Gene Family AT5G02790 62.9 3.6e-82 301.6
Clacu02g1383 . 3 230 Glutathione S-transferase Gene Family AT1G19570 61.1 1.4e-77 286.2
Clacu05g1301 . 65 272 Glutathione S-transferase Gene Family AT1G19570 58.9 3.1e-72 268.5
Clacu02g1383 . 3 229 Glutathione S-transferase Gene Family AT1G75270 65.4 1.7e-83 305.8
Clacu05g1301 . 65 272 Glutathione S-transferase Gene Family AT1G75270 62.2 3.9e-75 278.1
Clacu05g1301 . 9 274 Glutathione S-transferase Gene Family AT5G16710 68.3 7.0e-103 370.5
Clacu02g1383 . 5 228 Glutathione S-transferase Gene Family AT5G16710 54.9 5.1e-69 258.1
Clacu11g1781 . 1 267 Glutathione S-transferase Gene Family AT1G77290 70.0 2.7e-110 395.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000291 5 5 16 3 3 4 0 3 4 5 2 4 5 4 5 5 4 4 3 4 3 8 4 5 5 8 2 4 1 17 145