Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu07g1060 ATGGAGGACGATTACTCTATCTTCCCTCCCGATTCAGATCTCGATTTCAGCTTCACGTCCACCGCCACCGACCGCACCTTCACCACCTCCTCCAGCGCTCGAACCAGCCTTGCTCGGAGCAGTCTAACACTCAGCTTCAATGAATCTCGTCTCTCTGCCGCTGCAGCCGCCGCCGCTGCCGTTGTTAACCTCCGCCCCCACCGCCACTCCGACCCTCACTGGTCCGCCATTAAAGCCGCTACTACTCTCTCTTCCGACGGCCATCTTCACCTCCGCCACCTCAAACTCATCCGCCATCTCGGTACCGGCAACCTCGGCCGTGTTTTCTTATGCCATTTGAGAGACAACGATCACGCCAGTTTCGCTTTGAAGGTGGTGGATAAGGAGGCTCTTAGTAATAAGAAGCTTTTGCAGGTCCAAACGGAAGCCGAGATTCTGGCTTCCTTGGACCACCCTTTTCTCCCAACTCTCTACGCGCGTCTCGACGTCTCTCACTACACGTGCCTCCTTATCGACTATTGTCCTGCCGGTGACCTCCATTCACTCCTCCGCAAACAGCCTGGTAACCGTCTTTCTGTCGCGGCGGCGAGATTCTTTGCCGCCGAGATCCTGGTGGCGCTCGAGTACCTTCACGCGCTTGGGATTGTGTACCGCGATCTCAAGCCTGAGAACGTTCTTTTGCGTGAGGATGGCCACGTCATGCTCTCGGATTTCGACTTGTGTTTTAAATCCGACGTGGTACCCACTTTTCATACGTGGACTCGCCCGGGACCACAGCCTGCTACCTGCTGCTTTGGATGGAAGACGGCGGAGGAGGAAGAGGAGATTGTCGGGGAGTTTGTGGCGGAGCCGACAGCGGCGTTTTCGAAGTCGTGCGTAGGGACTCATGAGTACTTGGCGCCCGAGTTAGTGACCGGTGGTGGCCACGGAAACGGCGTAGACTGGTGGGCGTTTGGGGTGTTCGTTTACGAGCTTCTGCACGGGACGACGCCGTTTAAAGGAGTGAATAAGGAGGGTACGTTAAGGAACATTGCGTCGTCGGAGGGGGTGAAGTTCCGGGCGGCGGCGGCGGAGGAAGAGGAAGGGATGGCGGACGCGAGAGATCTAATAGAGAGGCTGCTAGTGAAAGATCCGGCGAGGCGGTTGGGTTCCGGGAAAGGGGCGACGGAGATCAAACGGCATCCGTTCTTCGACGGGATAAAATGGCCGTTGATCAGGACATATCGGGCGCCGGAGGTGTATGGGCTGATGAGAAAAGCCAGATCCCACGTGAGCCACGTGACAGGCGTGACCCACCGCATGCGGCGGCGGGGCTGGTGGAACTGGAGGAAGCTCATTAGCAACCGTTTAATTAAAAATGGAAGTTCAAGTAAATCTCATACCAATACCAATTATTATAGTTATAGTTCCAAAAATAAGACGGGTTGA 1428 55.88 MEDDYSIFPPDSDLDFSFTSTATDRTFTTSSSARTSLARSSLTLSFNESRLSAAAAAAAAVVNLRPHRHSDPHWSAIKAATTLSSDGHLHLRHLKLIRHLGTGNLGRVFLCHLRDNDHASFALKVVDKEALSNKKLLQVQTEAEILASLDHPFLPTLYARLDVSHYTCLLIDYCPAGDLHSLLRKQPGNRLSVAAARFFAAEILVALEYLHALGIVYRDLKPENVLLREDGHVMLSDFDLCFKSDVVPTFHTWTRPGPQPATCCFGWKTAEEEEEIVGEFVAEPTAAFSKSCVGTHEYLAPELVTGGGHGNGVDWWAFGVFVYELLHGTTPFKGVNKEGTLRNIASSEGVKFRAAAAEEEEGMADARDLIERLLVKDPARRLGSGKGATEIKRHPFFDGIKWPLIRTYRAPEVYGLMRKARSHVSHVTGVTHRMRRRGWWNWRKLISNRLIKNGSSSKSHTNTNYYSYSSKNKTG 475
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 25129721 25131148 - ClG42_07g0106000.10 Clacu07g1060 253658
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu07g1060 475 ProSiteProfiles Protein kinase domain profile. 94 397 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu07g1060 475 SUPERFAMILY Protein kinase-like (PK-like) 70 426 IPR011009 -
Clacu07g1060 475 Gene3D Transferase(Phosphotransferase) domain 1 289 410 - -
Clacu07g1060 475 Gene3D Transferase(Phosphotransferase) domain 1 178 244 - -
Clacu07g1060 475 Gene3D Phosphorylase Kinase; domain 1 94 177 - -
Clacu07g1060 475 ProSitePatterns Serine/Threonine protein kinases active-site signature. 215 227 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Clacu07g1060 475 FunFam Serine/threonine-protein kinase OXI1 178 245 - -
Clacu07g1060 475 FunFam Serine/threonine-protein kinase OXI1 287 415 - -
Clacu07g1060 475 CDD STKc_phototropin_like 92 413 - -
Clacu07g1060 475 SMART serkin_6 94 397 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu07g1060 475 MobiDBLite consensus disorder prediction 453 475 - -
Clacu07g1060 475 PANTHER FLIPPASE KINASE 1-RELATED 46 416 - GO:0004674(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0005886(PANTHER)|GO:0006468(PANTHER)
Clacu07g1060 475 Pfam Protein kinase domain 96 242 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu07g1060 475 Pfam Protein kinase domain 289 397 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu07g1060 Clacu-Chr7:25129721 Clacu11g0425 Clacu-Chr11:3994231 2.40E-93 dispersed
Clacu02g0023 Clacu-Chr2:281881 Clacu07g1060 Clacu-Chr7:25129721 9.10E-16 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
73699 PF00069 Pkinase 7.10E-54 CL0016 Clacu PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu07g1060 - - - 0.0